RNA id: TU525603


Basic Information

Item Value
RNA id TU525603
length 472
lncRNA type antisense_over
GC content 0.48
exon number 3
gene id G457872
representative True

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 3722749 ~ 3732110 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGCTTTCATCACTGGGAAGATTTGCCTGCTTGTCTTTGGGTATGAGTTTGAAAAGGGCCTCGCTGAGTTCAATCACTTCAGGTTTTGTGACGTAACCATTCTTGTCCACATCAAACAGTGAGAAGACCCACTCCAGCTTCAAGGTCGACTTGCCTGAGGAGGTCATGTGAAGAGCAACGACATACTCCTTAAAGTCTAATGTTCCATCATCATTGGTGTCAAAGGACCGAAAAACGTGTTGGGCATAGGCCTTGGCATCACTGTCGGGGAAGAATTTGGCATAGATCTCCTCAAACTGTTGTAGTGTGATGCGACCTGTAGGACACTGCTTCTGGAAGTTCTCATACCACTGGGTGATCTCAGCTTCAGAGAACCTGGTGGTCAGCTTGAGGTCATCCACAATCTCTTTGGGAATCCCTCCACTCTGTGCGTTTCCCATGGCTTCCCTGTGGTTGTGGTTTAAGGATGAAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU525590 lncRNA upstream 26544 3692881 ~ 3696205 (+) True G457859
TU525569 lncRNA upstream 87269 3631777 ~ 3635480 (+) True G457842
TU525513 lncRNA upstream 150622 3540803 ~ 3572127 (+) False G457797
TU525606 lncRNA downstream 4336 3736446 ~ 3738593 (+) True G457874
TU525592 lncRNA downstream 70896 3803006 ~ 3805511 (+) True CI01000321_03795430_03804685
TU525610 lncRNA downstream 106197 3838307 ~ 3838532 (+) True G457878
TU527061 lncRNA downstream 366911 4099021 ~ 4102339 (+) True G459126
TU527121 lncRNA downstream 504394 4236504 ~ 4236726 (+) True G459178
CI01000321_03714795_03718845.mRNA mRNA upstream 3664 3714476 ~ 3719085 (+) True CI01000321_03714795_03718845
CI01000321_03702229_03709660.mRNA mRNA upstream 12941 3702088 ~ 3709808 (+) True CI01000321_03702229_03709660
CI01000321_03680978_03683234.mRNA mRNA upstream 39070 3680978 ~ 3683679 (+) True CI01000321_03680978_03683234
CI01000321_03674424_03676748.mRNA mRNA upstream 45745 3674424 ~ 3677004 (+) True CI01000321_03674424_03676748
CI01000321_03650761_03655489.mRNA mRNA upstream 67240 3649366 ~ 3655509 (+) True CI01000321_03650761_03655489
CI01000321_03739229_03740955.mRNA mRNA downstream 7119 3739229 ~ 3740990 (+) True CI01000321_03739229_03740955
CI01000321_03749658_03759359.mRNA mRNA downstream 17548 3749658 ~ 3759645 (+) True CI01000321_03749658_03759359
CI01000321_03767896_03783640.mRNA mRNA downstream 35786 3767896 ~ 3783926 (+) True CI01000321_03767896_03783640
CI01000321_03795430_03804685.mRNA mRNA downstream 63191 3795301 ~ 3804735 (+) False CI01000321_03795430_03804685
CI01000321_03811184_03815473.mRNA mRNA downstream 78185 3810295 ~ 3815631 (+) True CI01000321_03811184_03815473
TU524456 other upstream 2899902 818464 ~ 822847 (+) True G456881
TU524336 other upstream 3295724 426083 ~ 427025 (+) True G456774
TU525588 other downstream 57208 3789318 ~ 3789972 (+) True G457857
TU527032 other downstream 274516 4006626 ~ 4009532 (+) False G459103
TU527033 other downstream 274553 4006663 ~ 4009532 (+) True G459103
TU527265 other downstream 753287 4485397 ~ 4488552 (+) True G459303
TU527165 other downstream 783424 4515534 ~ 4518187 (+) True CI01000321_04515562_04517953

Expression Profile