RNA id: TU525610


Basic Information

Item Value
RNA id TU525610
length 226
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G457878
representative True

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 3838307 ~ 3838532 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCGATTTGTGGATCGGTCCAGGTTTTTCCGAATGCATCGCGATTCTCTCTTGAATCGATTCTGAGCTTAGTTATTAACAGCAGATGGCGCTCTAGGCTAGTTTTTAACCGCACTCTCAAATGCTCACGAAGAAGAGCGCTGAAGAGCGTTCATGTATTCGGCTGAACTTGCACCTTTAGAATGCTTTTGTGACTCGAGATTAATGTAAACACCCTTGTAATTCGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU525592 lncRNA upstream 32796 3803006 ~ 3805511 (+) True CI01000321_03795430_03804685
TU525606 lncRNA upstream 99714 3736446 ~ 3738593 (+) True G457874
TU525603 lncRNA upstream 106197 3722749 ~ 3732110 (+) True G457872
TU525590 lncRNA upstream 142102 3692881 ~ 3696205 (+) True G457859
TU525569 lncRNA upstream 202827 3631777 ~ 3635480 (+) True G457842
TU527061 lncRNA downstream 260489 4099021 ~ 4102339 (+) True G459126
TU527121 lncRNA downstream 397972 4236504 ~ 4236726 (+) True G459178
TU527123 lncRNA downstream 410074 4248606 ~ 4248923 (+) True G459180
TU527124 lncRNA downstream 410537 4249069 ~ 4249296 (+) True G459181
TU527125 lncRNA downstream 411699 4250231 ~ 4250465 (+) True G459182
CI01000321_03820289_03828024.mRNA mRNA upstream 9535 3820124 ~ 3828772 (+) True CI01000321_03820289_03828024
CI01000321_03811184_03815473.mRNA mRNA upstream 22676 3810295 ~ 3815631 (+) True CI01000321_03811184_03815473
CI01000321_03795430_03804685.mRNA mRNA upstream 33572 3795301 ~ 3804735 (+) False CI01000321_03795430_03804685
CI01000321_03767896_03783640.mRNA mRNA upstream 54381 3767896 ~ 3783926 (+) True CI01000321_03767896_03783640
CI01000321_03749658_03759359.mRNA mRNA upstream 78662 3749658 ~ 3759645 (+) True CI01000321_03749658_03759359
CI01000321_03898978_03936261.mRNA mRNA downstream 60446 3898978 ~ 3936261 (+) True CI01000321_03898978_03936261
CI01000321_03937712_03954703.mRNA mRNA downstream 98900 3937432 ~ 3955589 (+) True CI01000321_03937712_03954703
CI01000321_03981145_03984891.mRNA mRNA downstream 142613 3981145 ~ 3984984 (+) True CI01000321_03981145_03984891
CI01000321_03989853_03999565.mRNA mRNA downstream 151197 3989729 ~ 4001036 (+) True CI01000321_03989853_03999565
CI01000321_04013470_04014515.mRNA mRNA downstream 174938 4013470 ~ 4015412 (+) False CI01000321_04013470_04014515
TU525588 other upstream 35425 3789318 ~ 3789972 (+) True G457857
TU524456 other upstream 3015460 818464 ~ 822847 (+) True G456881
TU524336 other upstream 3411282 426083 ~ 427025 (+) True G456774
TU527032 other downstream 168094 4006626 ~ 4009532 (+) False G459103
TU527033 other downstream 168131 4006663 ~ 4009532 (+) True G459103
TU527265 other downstream 646865 4485397 ~ 4488552 (+) True G459303
TU527165 other downstream 677002 4515534 ~ 4518187 (+) True CI01000321_04515562_04517953
TU527167 other downstream 908880 4747412 ~ 4747464 (+) True G459223

Expression Profile