RNA id: TU527121


Basic Information

Item Value
RNA id TU527121
length 223
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G459178
representative True

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 4236504 ~ 4236726 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAGACAAGAGACGCGCATTTAGGACTTTGCATGCGCATTAGCTTGATCCAGCCTGAAAAATAAAATTTTTGTCATGATTCAAGTGTTTAGAAACAAAATCTATGAGACAGTTGTTGTCAGATTTCATTGGTGATTTCAAATATGAAATTTAACTGAAAGCTTGGCAAACAGCTTTGGAGAATTTGATGTTTCCCCATAGGAGCTGTACTTGCATACCCGAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU527061 lncRNA upstream 134165 4099021 ~ 4102339 (+) True G459126
TU525610 lncRNA upstream 397972 3838307 ~ 3838532 (+) True G457878
TU525592 lncRNA upstream 430993 3803006 ~ 3805511 (+) True CI01000321_03795430_03804685
TU525606 lncRNA upstream 497911 3736446 ~ 3738593 (+) True G457874
TU525603 lncRNA upstream 504394 3722749 ~ 3732110 (+) True G457872
TU527123 lncRNA downstream 11880 4248606 ~ 4248923 (+) True G459180
TU527124 lncRNA downstream 12343 4249069 ~ 4249296 (+) True G459181
TU527125 lncRNA downstream 13505 4250231 ~ 4250465 (+) True G459182
TU527126 lncRNA downstream 13941 4250667 ~ 4250959 (+) True G459183
TU527127 lncRNA downstream 15864 4252590 ~ 4252866 (+) True G459184
CI01000321_04223582_04224440.mRNA mRNA upstream 10993 4223582 ~ 4225511 (+) True CI01000321_04223582_04224440
CI01000321_04204706_04214819.mRNA mRNA upstream 21643 4204076 ~ 4214861 (+) True CI01000321_04204706_04214819
CI01000321_04188431_04194328.mRNA mRNA upstream 42119 4188431 ~ 4194385 (+) True CI01000321_04188431_04194328
CI01000321_04120043_04140867.mRNA mRNA upstream 95211 4120043 ~ 4141293 (+) True CI01000321_04120043_04140867
CI01000321_04082880_04096700.mRNA mRNA upstream 139207 4082880 ~ 4097297 (+) True CI01000321_04082880_04096700
CI01000321_04274723_04276159.mRNA mRNA downstream 37119 4273845 ~ 4276217 (+) False CI01000321_04274723_04276159
CI01000321_04299710_04300495.mRNA mRNA downstream 62132 4298858 ~ 4300521 (+) True CI01000321_04299710_04300495
CI01000321_04515562_04517953.mRNA mRNA downstream 278836 4515562 ~ 4518169 (+) False CI01000321_04515562_04517953
CI01000321_04524751_04530395.mRNA mRNA downstream 288025 4524751 ~ 4531478 (+) True CI01000321_04524751_04530395
CI01000321_04532761_04559105.mRNA mRNA downstream 296035 4532761 ~ 4559105 (+) True CI01000321_04532761_04559105
TU527032 other upstream 222838 4006626 ~ 4009532 (+) False G459103
TU527033 other upstream 222838 4006663 ~ 4009532 (+) True G459103
TU525588 other upstream 433622 3789318 ~ 3789972 (+) True G457857
TU524456 other upstream 3413657 818464 ~ 822847 (+) True G456881
TU524336 other upstream 3809479 426083 ~ 427025 (+) True G456774
TU527265 other downstream 248671 4485397 ~ 4488552 (+) True G459303
TU527165 other downstream 278808 4515534 ~ 4518187 (+) True CI01000321_04515562_04517953
TU527167 other downstream 510686 4747412 ~ 4747464 (+) True G459223

Expression Profile