RNA id: TU527123


Basic Information

Item Value
RNA id TU527123
length 318
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G459180
representative True

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 4248606 ~ 4248923 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTCTGAAGAAGCACGATTGCTTACCAAATTTGATAAACGGAAGATCAAATGTGCTTTGTTGATGTGCAAAAATCAACAAGGTTTATTCTTGTTTGTCAAGCAAGTACGAATGAGCTTGTGTTAACCATATTTGATCTATGTTCCCTGATCAATGTTTATATGCAAAAAAAAGCCTAAATCAAACCTGTCCATCATACAAAAATTTATTGTTTCCCTTCAGAAGACTTGGAATAAACTTTTCAATTTCCTTTCCGATCTCTGTATGGCCTTTTTGAATAGATTTTGAAAAGATCAATAAAAATACTGGTTTCATTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU527121 lncRNA upstream 11880 4236504 ~ 4236726 (+) True G459178
TU527061 lncRNA upstream 146267 4099021 ~ 4102339 (+) True G459126
TU525610 lncRNA upstream 410074 3838307 ~ 3838532 (+) True G457878
TU525592 lncRNA upstream 443095 3803006 ~ 3805511 (+) True CI01000321_03795430_03804685
TU525606 lncRNA upstream 510013 3736446 ~ 3738593 (+) True G457874
TU527124 lncRNA downstream 146 4249069 ~ 4249296 (+) True G459181
TU527125 lncRNA downstream 1308 4250231 ~ 4250465 (+) True G459182
TU527126 lncRNA downstream 1744 4250667 ~ 4250959 (+) True G459183
TU527127 lncRNA downstream 3667 4252590 ~ 4252866 (+) True G459184
TU527128 lncRNA downstream 4319 4253242 ~ 4253466 (+) True G459185
CI01000321_04223582_04224440.mRNA mRNA upstream 23095 4223582 ~ 4225511 (+) True CI01000321_04223582_04224440
CI01000321_04204706_04214819.mRNA mRNA upstream 33745 4204076 ~ 4214861 (+) True CI01000321_04204706_04214819
CI01000321_04188431_04194328.mRNA mRNA upstream 54221 4188431 ~ 4194385 (+) True CI01000321_04188431_04194328
CI01000321_04120043_04140867.mRNA mRNA upstream 107313 4120043 ~ 4141293 (+) True CI01000321_04120043_04140867
CI01000321_04082880_04096700.mRNA mRNA upstream 151309 4082880 ~ 4097297 (+) True CI01000321_04082880_04096700
CI01000321_04274723_04276159.mRNA mRNA downstream 24922 4273845 ~ 4276217 (+) False CI01000321_04274723_04276159
CI01000321_04299710_04300495.mRNA mRNA downstream 49935 4298858 ~ 4300521 (+) True CI01000321_04299710_04300495
CI01000321_04515562_04517953.mRNA mRNA downstream 266639 4515562 ~ 4518169 (+) False CI01000321_04515562_04517953
CI01000321_04524751_04530395.mRNA mRNA downstream 275828 4524751 ~ 4531478 (+) True CI01000321_04524751_04530395
CI01000321_04532761_04559105.mRNA mRNA downstream 283838 4532761 ~ 4559105 (+) True CI01000321_04532761_04559105
TU527032 other upstream 234940 4006626 ~ 4009532 (+) False G459103
TU527033 other upstream 234940 4006663 ~ 4009532 (+) True G459103
TU525588 other upstream 445724 3789318 ~ 3789972 (+) True G457857
TU524456 other upstream 3425759 818464 ~ 822847 (+) True G456881
TU524336 other upstream 3821581 426083 ~ 427025 (+) True G456774
TU527265 other downstream 236474 4485397 ~ 4488552 (+) True G459303
TU527165 other downstream 266611 4515534 ~ 4518187 (+) True CI01000321_04515562_04517953
TU527167 other downstream 498489 4747412 ~ 4747464 (+) True G459223

Expression Profile