Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU527169 |
| length | 1835 |
| lncRNA type | antisense_over |
| GC content | 0.37 |
| exon number | 2 |
| gene id | G459225 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000321 |
| NCBI id | null |
| chromosome length | 5206101 |
| location | 4495458 ~ 4498112 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU527183 | lncRNA | upstream | 34776 | 4451626 ~ 4460682 (+) | True | G459239 |
| TU527253 | lncRNA | upstream | 54005 | 4441177 ~ 4441453 (+) | True | G459292 |
| TU527245 | lncRNA | upstream | 65241 | 4428730 ~ 4430217 (+) | True | G459284 |
| TU527177 | lncRNA | upstream | 82118 | 4411006 ~ 4413340 (+) | True | G459233 |
| TU527168 | lncRNA | upstream | 88576 | 4371471 ~ 4406882 (+) | True | G459224 |
| TU527164 | lncRNA | downstream | 136730 | 4634842 ~ 4634887 (+) | True | G459220 |
| TU527289 | lncRNA | downstream | 195502 | 4693614 ~ 4767280 (+) | False | G459323 |
| TU527184 | lncRNA | downstream | 198559 | 4696671 ~ 4700949 (+) | True | G459240 |
| TU527175 | lncRNA | downstream | 212320 | 4710432 ~ 4711448 (+) | True | G459231 |
| TU527287 | lncRNA | downstream | 267229 | 4765341 ~ 4767280 (+) | True | G459323 |
| CI01000321_04299710_04300495.mRNA | mRNA | upstream | 194937 | 4298858 ~ 4300521 (+) | True | CI01000321_04299710_04300495 |
| CI01000321_04274723_04276159.mRNA | mRNA | upstream | 219241 | 4273845 ~ 4276217 (+) | False | CI01000321_04274723_04276159 |
| CI01000321_04223582_04224440.mRNA | mRNA | upstream | 269947 | 4223582 ~ 4225511 (+) | True | CI01000321_04223582_04224440 |
| CI01000321_04204706_04214819.mRNA | mRNA | upstream | 280597 | 4204076 ~ 4214861 (+) | True | CI01000321_04204706_04214819 |
| CI01000321_04188431_04194328.mRNA | mRNA | upstream | 301073 | 4188431 ~ 4194385 (+) | True | CI01000321_04188431_04194328 |
| CI01000321_04515562_04517953.mRNA | mRNA | downstream | 17450 | 4515562 ~ 4518169 (+) | False | CI01000321_04515562_04517953 |
| CI01000321_04524751_04530395.mRNA | mRNA | downstream | 26639 | 4524751 ~ 4531478 (+) | True | CI01000321_04524751_04530395 |
| CI01000321_04532761_04559105.mRNA | mRNA | downstream | 34649 | 4532761 ~ 4559105 (+) | True | CI01000321_04532761_04559105 |
| CI01000321_04567844_04592431.mRNA | mRNA | downstream | 69732 | 4567844 ~ 4592571 (+) | True | CI01000321_04567844_04592431 |
| CI01000321_04605557_04620142.mRNA | mRNA | downstream | 106853 | 4604965 ~ 4620398 (+) | True | CI01000321_04605557_04620142 |
| TU527265 | other | upstream | 6906 | 4485397 ~ 4488552 (+) | True | G459303 |
| TU527032 | other | upstream | 481792 | 4006626 ~ 4009532 (+) | False | G459103 |
| TU527033 | other | upstream | 481792 | 4006663 ~ 4009532 (+) | True | G459103 |
| TU525588 | other | upstream | 692576 | 3789318 ~ 3789972 (+) | True | G457857 |
| TU524456 | other | upstream | 3672611 | 818464 ~ 822847 (+) | True | G456881 |
| TU527165 | other | downstream | 17422 | 4515534 ~ 4518187 (+) | True | CI01000321_04515562_04517953 |
| TU527167 | other | downstream | 249300 | 4747412 ~ 4747464 (+) | True | G459223 |
