RNA id: TU527600


Basic Information

Item Value
RNA id TU527600
length 307
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G459598
representative True

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 4642303 ~ 4642609 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTTGATTAAATCCGATGGCTCAGTGAGGCCTGCGTTTAAAGCCATGACATTTCCTCTCTCAAGATCCATAAAGGTACTAAAAACATATTTAAAACAGTTGATGTGAGTTCAGTGGTTCTACCTTAATATTATAAAGCGACGAGAATACTTTTTGTGCGCCAAAAAAACAAAATAACGACTTTTCAACAATATAGTGATGGGCCGATTTCAAAACACTGCTTCGGAGCTTTACGAATCGAATCAGTGACTCGGAGCGCTAAAATCACGTGATTTCAGCAGTTTAGCCGTTTGATAGGAGATCCGAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU527381 lncRNA downstream 2188 4634865 ~ 4640115 (-) False G459403
TU527379 lncRNA downstream 2188 4635326 ~ 4640115 (-) False G459403
TU527382 lncRNA downstream 2188 4635326 ~ 4640115 (-) False G459403
TU527383 lncRNA downstream 2188 4635326 ~ 4640115 (-) True G459403
TU527437 lncRNA downstream 10625 4629578 ~ 4631678 (-) True G459447
TU527613 lncRNA upstream 58870 4701479 ~ 4749581 (-) True G459610
TU527616 lncRNA upstream 69665 4712274 ~ 4716814 (-) True G459612
TU527655 lncRNA upstream 155886 4798495 ~ 4798774 (-) True G459645
TU527780 lncRNA upstream 292010 4934619 ~ 4935681 (-) True G459764
TU527833 lncRNA upstream 387370 5029979 ~ 5030313 (-) True G459807
CI01000321_04514194_04514490.mRNA mRNA downstream 127813 4514044 ~ 4514490 (-) True CI01000321_04514194_04514490
CI01000321_04510676_04512993.mRNA mRNA downstream 128735 4510361 ~ 4513568 (-) True CI01000321_04510676_04512993
CI01000321_04496126_04503083.mRNA mRNA downstream 139220 4495451 ~ 4503083 (-) True CI01000321_04496126_04503083
CI01000321_04483181_04491284.mRNA mRNA downstream 151019 4483120 ~ 4491284 (-) True CI01000321_04483181_04491284
CI01000321_04444212_04473051.mRNA mRNA downstream 169252 4444194 ~ 4473051 (-) True CI01000321_04444212_04473051
CI01000321_04694693_04706830.mRNA mRNA upstream 51956 4694565 ~ 4707157 (-) True CI01000321_04694693_04706830
CI01000321_04710611_04711031.mRNA mRNA upstream 67843 4710452 ~ 4711384 (-) True CI01000321_04710611_04711031
CI01000321_04767177_04772703.mRNA mRNA upstream 124353 4766962 ~ 4772703 (-) True CI01000321_04767177_04772703
CI01000321_04864287_04872091.mRNA mRNA upstream 221336 4863945 ~ 4872091 (-) True CI01000321_04864287_04872091
CI01000321_04965389_04968595.mRNA mRNA upstream 321270 4963879 ~ 4969345 (-) True CI01000321_04965389_04968595
TU526931 other downstream 825908 3810127 ~ 3816395 (-) True G459011
TU526872 other downstream 904318 3736456 ~ 3737985 (-) True CI01000321_03737149_03737996
TU526870 other downstream 975304 3661626 ~ 3666999 (-) True G458957
TU526761 other downstream 1152769 3471881 ~ 3489534 (-) True G458859
TU526693 other downstream 1550376 3088115 ~ 3091927 (-) True G458802
TU527829 other upstream 376357 5018966 ~ 5025886 (-) True G459803

Expression Profile