RNA id: TU527616


Basic Information

Item Value
RNA id TU527616
length 686
lncRNA type antisense_over
GC content 0.52
exon number 3
gene id G459612
representative True

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 4712274 ~ 4716814 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCAGGGCCTTCCTTTCGCCTGCGACCTGGGTACGTCCCAGAGCCTGAGCGCAACAGCCGGTCCACACGGTCAGACTTGGGCAAGGGTCTACGCATCTGCCGCGGGGACCGCGTGTTGGGGGTGGAAGCGGGTGAGTTGGGCTCTGGGGGGAGCTCGGGCTGGGGATACCCGCTCTGAACCAGCACCTCAGAGGCACACATGAGACACACGCTGTGCAGGCAGGGAAGTACAATTGGCTGCTTCACAATGTCCTTGCACACAGGACACTGCAATTCCTGCTCCATACTCTTCATATTGGACGTTTATGTTCCGTTTCTCCGCAGTAGACCATCATATGTCAATGGGGAAATCTTCCGTTGGCCGCCATTGCCTCTTTCAGGTTGAAATGTAGGTTAGTAGGATGTCGCTACATCAGCACGCAGCTGGAGATGCTTTCAAACGCTCTTGTCCTCCTGCCCGCATCCCGTTTCCGTGGCAACGAGCACGTCCGCTCCATCAGCACAGCAGCACGATTGCGAATACCAGCCTACCTCAATATGTCTAATATCACAACTTATAGCTTTTGCATTTTTTGGTATTATCAGTGTATTTTAGTCAAACTGACAGTCTCTTTCAATCATTTTAAAGTGGCACTGTAAAACAAGCACTCTAAAAAGTGAAACTGTGCAGCAGTGTTCTTTTTAAGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU527600 lncRNA downstream 69665 4642303 ~ 4642609 (-) True G459598
TU527381 lncRNA downstream 72159 4634865 ~ 4640115 (-) False G459403
TU527655 lncRNA upstream 81681 4798495 ~ 4798774 (-) True G459645
TU527780 lncRNA upstream 217805 4934619 ~ 4935681 (-) True G459764
TU527833 lncRNA upstream 313165 5029979 ~ 5030313 (-) True G459807
TU527911 lncRNA upstream 436643 5157089 ~ 5157176 (-) True G459883
TU527950 lncRNA upstream 469530 5186344 ~ 5186707 (-) True G459919
CI01000321_04710611_04711031.mRNA mRNA downstream 890 4710452 ~ 4711384 (-) True CI01000321_04710611_04711031
CI01000321_04694693_04706830.mRNA mRNA downstream 5117 4694565 ~ 4707157 (-) True CI01000321_04694693_04706830
CI01000321_04514194_04514490.mRNA mRNA downstream 197784 4514044 ~ 4514490 (-) True CI01000321_04514194_04514490
CI01000321_04510676_04512993.mRNA mRNA downstream 198706 4510361 ~ 4513568 (-) True CI01000321_04510676_04512993
CI01000321_04496126_04503083.mRNA mRNA downstream 209191 4495451 ~ 4503083 (-) True CI01000321_04496126_04503083
CI01000321_04767177_04772703.mRNA mRNA upstream 50148 4766962 ~ 4772703 (-) True CI01000321_04767177_04772703
CI01000321_04864287_04872091.mRNA mRNA upstream 147131 4863945 ~ 4872091 (-) True CI01000321_04864287_04872091
CI01000321_04965389_04968595.mRNA mRNA upstream 247065 4963879 ~ 4969345 (-) True CI01000321_04965389_04968595
CI01000321_05078234_05124375.mRNA mRNA upstream 361078 5077892 ~ 5124437 (-) True CI01000321_05078234_05124375
CI01000321_05141500_05146892.mRNA mRNA upstream 424196 5141010 ~ 5148412 (-) True CI01000321_05141500_05146892
TU526931 other downstream 895879 3810127 ~ 3816395 (-) True G459011
TU526872 other downstream 974289 3736456 ~ 3737985 (-) True CI01000321_03737149_03737996
TU526870 other downstream 1045275 3661626 ~ 3666999 (-) True G458957
TU526761 other downstream 1222740 3471881 ~ 3489534 (-) True G458859
TU526693 other downstream 1620347 3088115 ~ 3091927 (-) True G458802
TU527829 other upstream 302152 5018966 ~ 5025886 (-) True G459803

Expression Profile