RNA id: TU527780


Basic Information

Item Value
RNA id TU527780
length 962
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G459764
representative True

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 4934619 ~ 4935681 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGTGTTATAAGAGCCCAGGTTGCTCTGATAGTGGCCTTCAGCTCTTCTGCATTGTTGGGTCTGGCATATCGCATCTTCCTCTTCACAGTACCTCATAGATTTTCTATGGGGTTAAGGTCAGGCAAGTTTGCTGGCCAATTAAGAACAGGGATACCATGGTCCTTAAACCAGGTACTGGTAGCTTTGGCACTGTGTGCAGGTGCCAAGTCCTGTTGGAAAATGAAATTTGCATCTCCATAAAGTTGGTCAGCAGCAGGAAGCATGAAGTGCTCTAAAACTTCCTGGTATATGGCTGCGTTGACCTTGGACCTCAGAAAACACAGTGGACCAACACCAGCAGATGACATGGCACCCCAAACCATCACTGACTGTGGAAACTTTACACTGGACCTCAAGCAACATGGATTGTGTGCCTCTCCTCTCTTCCTCCAGACTCTGGGACCCTGATTTCCAAAGGAAATGCAAAATTTACCTTCATCAGAGAACATAACTTTTGACCACTCAGCAGCAGACCAGTCCTTTTTGTCTTTAGCCCAGGCGAGACGCTTCTGACGCTGTCTGTTGTTCAAGAGTAGCTTGACAAAAGAAATGCGAAAGCTGAAACCCATGTCTTGCATACGTCTGTGTGTAGTGGTTCTTGAAGCACTGACTCCAGCTGTCAGTTTGTTTCACAATCCTTTCCAGGGTGCGGTTATCCCTATTGCTTGTACACTTTTTTCTACCACATCTTTTCCTTCCCTTCGCCTCTCTATTAATGTGCTTGGACACAGAGCTCTGTGAACAGCCAGCCTCTTTTGCAATGACCTTTTGTGTCATGCCCTCCTTGTGCAAGGTGTCAATGGTTGTCTTTTGGACAACTGTCAAGTCAGCAGTCTTCCCCATGATTGTGTAGCCTACAGAACTAGACTGAGAGACCATTTAAAGGCCTTTGCAGGTGTTTTGAGTTAATTAGCTGATTAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU527655 lncRNA downstream 135845 4798495 ~ 4798774 (-) True G459645
TU527613 lncRNA downstream 185038 4701479 ~ 4749581 (-) True G459610
TU527616 lncRNA downstream 217805 4712274 ~ 4716814 (-) True G459612
TU527600 lncRNA downstream 292010 4642303 ~ 4642609 (-) True G459598
TU527379 lncRNA downstream 294504 4635326 ~ 4640115 (-) False G459403
TU527833 lncRNA upstream 94298 5029979 ~ 5030313 (-) True G459807
TU527911 lncRNA upstream 217776 5157089 ~ 5157176 (-) True G459883
TU527950 lncRNA upstream 250663 5186344 ~ 5186707 (-) True G459919
CI01000321_04864287_04872091.mRNA mRNA downstream 62528 4863945 ~ 4872091 (-) True CI01000321_04864287_04872091
CI01000321_04767177_04772703.mRNA mRNA downstream 161916 4766962 ~ 4772703 (-) True CI01000321_04767177_04772703
CI01000321_04710611_04711031.mRNA mRNA downstream 223235 4710452 ~ 4711384 (-) True CI01000321_04710611_04711031
CI01000321_04694693_04706830.mRNA mRNA downstream 227462 4694565 ~ 4707157 (-) True CI01000321_04694693_04706830
CI01000321_04514194_04514490.mRNA mRNA downstream 420129 4514044 ~ 4514490 (-) True CI01000321_04514194_04514490
CI01000321_04965389_04968595.mRNA mRNA upstream 28198 4963879 ~ 4969345 (-) True CI01000321_04965389_04968595
CI01000321_05078234_05124375.mRNA mRNA upstream 142211 5077892 ~ 5124437 (-) True CI01000321_05078234_05124375
CI01000321_05141500_05146892.mRNA mRNA upstream 205329 5141010 ~ 5148412 (-) True CI01000321_05141500_05146892
CI01000321_05151190_05175511.mRNA mRNA upstream 214630 5150311 ~ 5175511 (-) False CI01000321_05151190_05175511
TU526931 other downstream 1118224 3810127 ~ 3816395 (-) True G459011
TU526872 other downstream 1196634 3736456 ~ 3737985 (-) True CI01000321_03737149_03737996
TU526870 other downstream 1267620 3661626 ~ 3666999 (-) True G458957
TU526761 other downstream 1445085 3471881 ~ 3489534 (-) True G458859
TU526693 other downstream 1842692 3088115 ~ 3091927 (-) True G458802
TU527829 other upstream 83285 5018966 ~ 5025886 (-) True G459803

Expression Profile