RNA id: TU527829


Basic Information

Item Value
RNA id TU527829
length 447
RNA type TUCP
GC content 0.50
exon number 2
gene id G459803
representative True

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 5018966 ~ 5025886 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGAGACGTGTTCTCTGGAGTGACGAATCATGCTTCTCTGTCTGGCAATCCGATGGATGAGTCTGGGTTTGGTGGTTGCCAGGAGAACGGTACTTGCCTGACTGTATTGTGCCAAGTGTAAAGTTTGGTGGAGGGGGGATTATGGTGTGGGGTTGTTTTTCAGGGGTTGGGCTTGGCCCCTTAGTTCCAGTGAAAGGAACTCTTAATGCTTCAGCATACCAAGACATTTTGGACAATTTCATGCTTCCAACTTTGTGGGAACAGTTTGGGGATGGCCCCTTCCTGTTCCAACATGACTGCGCACCAGTGCACAAAGCAAGGTCCATAAAGACATGGATGAGCGAGTTTGGTGTGGAGGAACTTGACTGGCCTGCACAGAGTCCTGACCTCAACCCGATAGAACACCTTTGGGATGAATTAGAGCGGAGACTGTGAGCCAGACCTTCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU527780 lncRNA downstream 83285 4934619 ~ 4935681 (-) True G459764
TU527655 lncRNA downstream 220192 4798495 ~ 4798774 (-) True G459645
TU527613 lncRNA downstream 269385 4701479 ~ 4749581 (-) True G459610
TU527616 lncRNA downstream 302152 4712274 ~ 4716814 (-) True G459612
TU527600 lncRNA downstream 376357 4642303 ~ 4642609 (-) True G459598
TU527833 lncRNA upstream 4093 5029979 ~ 5030313 (-) True G459807
TU527911 lncRNA upstream 127571 5157089 ~ 5157176 (-) True G459883
TU527950 lncRNA upstream 160458 5186344 ~ 5186707 (-) True G459919
CI01000321_04965389_04968595.mRNA mRNA downstream 49621 4963879 ~ 4969345 (-) True CI01000321_04965389_04968595
CI01000321_04864287_04872091.mRNA mRNA downstream 146875 4863945 ~ 4872091 (-) True CI01000321_04864287_04872091
CI01000321_04767177_04772703.mRNA mRNA downstream 246263 4766962 ~ 4772703 (-) True CI01000321_04767177_04772703
CI01000321_04710611_04711031.mRNA mRNA downstream 307582 4710452 ~ 4711384 (-) True CI01000321_04710611_04711031
CI01000321_04694693_04706830.mRNA mRNA downstream 311809 4694565 ~ 4707157 (-) True CI01000321_04694693_04706830
CI01000321_05078234_05124375.mRNA mRNA upstream 52006 5077892 ~ 5124437 (-) True CI01000321_05078234_05124375
CI01000321_05141500_05146892.mRNA mRNA upstream 115124 5141010 ~ 5148412 (-) True CI01000321_05141500_05146892
CI01000321_05151190_05175511.mRNA mRNA upstream 124425 5150311 ~ 5175511 (-) False CI01000321_05151190_05175511
TU526931 other downstream 1202571 3810127 ~ 3816395 (-) True G459011
TU526872 other downstream 1280981 3736456 ~ 3737985 (-) True CI01000321_03737149_03737996
TU526870 other downstream 1351967 3661626 ~ 3666999 (-) True G458957
TU526761 other downstream 1529432 3471881 ~ 3489534 (-) True G458859
TU526693 other downstream 1927039 3088115 ~ 3091927 (-) True G458802

Expression Profile