RNA id: TCONS_00022007


Basic Information

Item Value
RNA id TCONS_00022007
length 406
lncRNA type inter_gene
GC content 0.50
exon number 3
gene id XLOC_010162
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 40873241 ~ 40893518 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtgagacacacacacgcacacagcacCCTCGCTCACGCTGTTATTCACTTACTTAAATTTATAAGCAGGCGATAGTACGTGACAGGCGTGCAATCTCACTGAGTAACCACAACACCTGCGACGCTTGAAGACATGATACTGACAGCGGTGGCGTGTGCTGAACTTCTGAAACGAGGAGCTACTGTTTTCAGTTTCTGGCTTAAATGGGAACATTGAAAACTATTTTTCTTGCATACAGGTCTACAAAATCTTGGACGCGGCCCGCATCCTGAGCAGATACTGTGGTGATCATGGAGGAGTAGGGAGCGTGAGACCCCAGAGACAGACGAATCCCCCTATTGATCCCGTGGGCTTAAACACTCAACGGTTTCCAGAAGCAGCCGAGGTGCATAATGAGCAGCGCTTC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020153 lncRNA upstream 290091 40580500 ~ 40583150 (+) True XLOC_010161
TCONS_00020143 lncRNA upstream 519163 40346484 ~ 40354078 (+) False XLOC_010157
TCONS_00020133 lncRNA upstream 719559 40131464 ~ 40153682 (+) False XLOC_010153
TCONS_00020135 lncRNA upstream 719559 40131580 ~ 40153682 (+) False XLOC_010153
TCONS_00022006 lncRNA upstream 758434 40082902 ~ 40114807 (+) True XLOC_010152
TCONS_00021742 lncRNA downstream 48219 40941737 ~ 40945757 (+) False XLOC_010163
TCONS_00021743 lncRNA downstream 48234 40941752 ~ 40943109 (+) False XLOC_010163
TCONS_00022008 lncRNA downstream 48361 40941879 ~ 40943999 (+) True XLOC_010163
TCONS_00022009 lncRNA downstream 143129 41036647 ~ 41054652 (+) False XLOC_010166
TCONS_00022010 lncRNA downstream 159734 41053252 ~ 41054652 (+) True XLOC_010166
TCONS_00020152 mRNA upstream 286448 40576680 ~ 40586793 (+) False XLOC_010161
TCONS_00020151 mRNA upstream 287461 40576679 ~ 40585780 (+) False XLOC_010161
TCONS_00020149 mRNA upstream 287477 40575742 ~ 40585764 (+) False XLOC_010161
TCONS_00020147 mRNA upstream 303472 40560622 ~ 40569769 (+) False XLOC_010160
TCONS_00020148 mRNA upstream 303472 40563533 ~ 40569769 (+) True XLOC_010160
TCONS_00020154 mRNA downstream 60963 40954481 ~ 40955839 (+) True XLOC_010164
TCONS_00020155 mRNA downstream 121645 41015163 ~ 41030634 (+) False XLOC_010165
TCONS_00020156 mRNA downstream 122263 41015781 ~ 41021830 (+) True XLOC_010165
TCONS_00020158 mRNA downstream 166643 41060161 ~ 41103782 (+) False XLOC_010167
TCONS_00020159 mRNA downstream 174068 41067586 ~ 41103755 (+) True XLOC_010167
TCONS_00020150 other upstream 287465 40576679 ~ 40585776 (+) False XLOC_010161
TCONS_00020144 other upstream 524287 40346595 ~ 40348954 (+) True XLOC_010157
TCONS_00020142 other upstream 525865 40346447 ~ 40347376 (+) False XLOC_010157
TCONS_00020139 other upstream 553011 40302791 ~ 40320230 (+) True XLOC_010153
TCONS_00020136 other upstream 689382 40183743 ~ 40183859 (+) True XLOC_010154
TCONS_00020157 other downstream 148792 41042310 ~ 41054232 (+) False XLOC_010166
TCONS_00020166 other downstream 653245 41546763 ~ 41548437 (+) True XLOC_010175
TCONS_00020194 other downstream 1879194 42772712 ~ 42781394 (+) False XLOC_010194
TCONS_00020198 other downstream 1982928 42876446 ~ 42878011 (+) True XLOC_010197
TCONS_00020200 other downstream 2004911 42898429 ~ 42898510 (+) False XLOC_010198