RNA id: TCONS_00020156


Basic Information

Item Value
RNA id TCONS_00020156
length 669
RNA type mRNA
GC content 0.40
exon number 3
gene id XLOC_010165
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 41015163 ~ 41030634 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAATTATATAAGGTTATTTTGCCGTACAGTATTAGTTTGATAACTCCGCCCCCTCCAGTACGTATTTATAGCTGCGACAGTTGTCCAAAAATGTCCAACATTGTTTAGTATATACGTCTCTGCATTCTGCATGTTCCACAATCAGTCATAAAAGAGGTGGATACATTTTTGTTCAATTTCATATTTGGTGGAACAgaccacattatttaaaaaagacagTGTTGTACAATCCAGTTGAAGATGTGGTCTCAATGTTCTTGATGTCAGCACTGCTGTAAGTGTATTTAAAACAAATGGATTCAGAATTACCTGAATTTTAAAGGATGCACCTGAGAAAGTCTGTTCCTCAGTGAAGAAATGGAAGCTATCAAGACAGAAGTACATCCTTTGGATGATGCAGAGCAGGATGAATCAGAGGAATCCTCACCCAAAACCACGTCTAAACCCAAAGTCAAAATGTTTGAACTGGAAATCGTTGAAGGAAAACGTGAGAAAAAGGTCATCCAGAGACTTGATATGATGAGTAAACCAAAGGAAAAGCCGAAGATTGAGAGCAAAGGAAGAGGCGACAAGCTGGGAGACATTGCACGAATTAACCACTCCATTGGGAAGCTTAAAGCTCCTTTGCTCAAACCGCTGCATAAGATCCTATATGATCGACCAGGGGCT

Function

GO:

id name namespace
GO:2000779 regulation of double-strand break repair biological_process
GO:0005634 nucleus cellular_component
GO:0042393 histone binding molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-060512-191 Predicted to enable histone binding activity. Predicted to be involved in regulation of double-strand break repair. Predicted to be active in nucleus. Orthologous to human DEK (DEK proto-oncogene).

Ensembl:

ensembl_id ENSDART00000124543

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021742 lncRNA upstream 70024 40941737 ~ 40945757 (+) False XLOC_010163
TCONS_00022008 lncRNA upstream 71782 40941879 ~ 40943999 (+) True XLOC_010163
TCONS_00021743 lncRNA upstream 72672 40941752 ~ 40943109 (+) False XLOC_010163
TCONS_00022007 lncRNA upstream 122263 40873241 ~ 40893518 (+) True XLOC_010162
TCONS_00020153 lncRNA upstream 432631 40580500 ~ 40583150 (+) True XLOC_010161
TCONS_00022009 lncRNA downstream 14817 41036647 ~ 41054652 (+) False XLOC_010166
TCONS_00022010 lncRNA downstream 31422 41053252 ~ 41054652 (+) True XLOC_010166
TCONS_00021744 lncRNA downstream 107234 41129064 ~ 41129320 (+) True XLOC_010168
TCONS_00021746 lncRNA downstream 120829 41142659 ~ 41144116 (+) False XLOC_010170
TCONS_00021745 lncRNA downstream 120829 41142659 ~ 41144116 (+) False XLOC_010170
TCONS_00020154 mRNA upstream 59942 40954481 ~ 40955839 (+) True XLOC_010164
TCONS_00020152 mRNA upstream 428988 40576680 ~ 40586793 (+) False XLOC_010161
TCONS_00020151 mRNA upstream 430001 40576679 ~ 40585780 (+) False XLOC_010161
TCONS_00020149 mRNA upstream 430017 40575742 ~ 40585764 (+) False XLOC_010161
TCONS_00020148 mRNA upstream 446012 40563533 ~ 40569769 (+) True XLOC_010160
TCONS_00020158 mRNA downstream 38331 41060161 ~ 41103782 (+) False XLOC_010167
TCONS_00020159 mRNA downstream 45756 41067586 ~ 41103755 (+) True XLOC_010167
TCONS_00020160 mRNA downstream 113188 41135018 ~ 41136139 (+) True XLOC_010169
TCONS_00020161 mRNA downstream 141024 41162854 ~ 41169589 (+) True XLOC_010171
TCONS_00020162 mRNA downstream 150119 41171949 ~ 41293417 (+) False XLOC_010172
TCONS_00020150 other upstream 430005 40576679 ~ 40585776 (+) False XLOC_010161
TCONS_00020144 other upstream 666827 40346595 ~ 40348954 (+) True XLOC_010157
TCONS_00020142 other upstream 668405 40346447 ~ 40347376 (+) False XLOC_010157
TCONS_00020139 other upstream 695551 40302791 ~ 40320230 (+) True XLOC_010153
TCONS_00020136 other upstream 831922 40183743 ~ 40183859 (+) True XLOC_010154
TCONS_00020157 other downstream 20480 41042310 ~ 41054232 (+) False XLOC_010166
TCONS_00020166 other downstream 524933 41546763 ~ 41548437 (+) True XLOC_010175
TCONS_00020194 other downstream 1750882 42772712 ~ 42781394 (+) False XLOC_010194
TCONS_00020198 other downstream 1854616 42876446 ~ 42878011 (+) True XLOC_010197
TCONS_00020200 other downstream 1876599 42898429 ~ 42898510 (+) False XLOC_010198

Expression Profile

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