RNA id: TCONS_00003334


Basic Information

Item Value
RNA id TCONS_00003334
length 6621
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id XLOC_001001
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 8579155 ~ 8587359 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gttccgcgtgtctttggactgtgggggaagttgaagcaaccggaggaaacccacacgaacgcagggagaacatgcaaactccacacaaaaacaccaactgactgagttgaggcttgaaccagcatcGCCACTGCAAGTCATACATTCAGTACAAAATGTCAAATACAaaggaaaaacataaaataatggaacatttaaaaagccacAGTAGTACTCACCAACTGTTGCTGCTGTCACTGCCGTGTACACTTTGAAGATGCCACAATGTCCTCCTGATGTCCCTTACTGCTGCTGACATTACTCTCTTCACACAGCAACCACCTCAGGTACGACACACCGCCTTCATGCGACCATAAATCCAGATCACCAGGTAGAATACAGGATGCTGTTTATGACGCATCTACATGTCTTCCGTGTCCCAGTTCAGTTTAAGTCAACAACGTAGGCCAGTGTTCATTTCTCTGTGGTTGCCATAGTGATGAGCAGTAGGTATAGTAGGGATTGGAACAACTCCAGAATGGGCTTTCTTCCAGACGAGAGGTGGTCTTTGTTGAAGTCTCCACAGACAATTATGGGATTCTCCATCATTTCCAATTAATTCAGTCGATTGCATTATTATGCTTTGAACTTTGTGCATGCGCAAGCCAACTTGATTGGAAATTGTCGACGGACTGCTCTTTTCTTTACAGGTTCCTCTGATCTTTCGATGTAGACTAAAGTGTCCTGTTCACCTTGCAGTCGTCGTCTGTATTTCTGGCCAGCATTTGGATTGTCGGGCTGAATGCCAAGCATGTGCACAAATGCAATTCCATCTCTTGTTTTAGTCACAATGTTTCTAATGTTTCCAAAGCATCCATTGACGAGTCCATCTTCGACATCCAGATTTCTTATCATCATTATGCGGACTCCCACTGCAACTTGTATGGTGTCAAGCAGGTCGTCTTTATTACCCATGACAGGTTTAGTCTGTCTTTTCATCCCACCTGTTCTTGGGTCTTTCCGGTAATCTTCAGCATGAATGGTTATGATGTCAGCATGAAGAGCGTTTACCGTCTCACTATTGTGACTGTGGACTTCCTTGTTGGTTGCAAATATGTGCAATGCATCACGTGGGCAGTCTTGGGGATTCCTCACAGCCTGCAATAACAAAGATCTATCTTCTTCTTTAAGAGGATCAGATTTCCGTTTCACTCTCAATCGGTTTAAAAGCTGGGCAAATGCAAGGTCCTCTTTCTGCCGCATGATCTCCGTGAGGGTTATGATTTGGAAGTGGTCCTTCCAAAAGTCCAGCACATCCTCTTCGTAAACGCAGAGTGGCTTGGCTTTTCCCGGGGGCGGTAATTGATAAAAGTCTCCCACCACAATGACAGAAATGCCCCCAAAGGGTTTCTTGCTGCCTCTGATCTGTTGAAACCTCCAGTTGATGTATGCAAAAAAGTCTTTTGAAATCATAGAGATTTCGTCAATAATCAAGATTTCCACGTGACGTAATCCTGCTCGTACATCATCAAGAGAGTTCCCAAGTCCTTGATAGGGTGGCTTCAAGTTCCTTGGCAGCTTTAGAATGGAATGCAGAGTTTTTCCAGAAATGTTGAACGCTGCTGTTCCAGTGAATGCACTTAAAATCACTGTAGGAATGGAGAGATCCCCATCCTCCCGGAGCTGAGGAAGTTGTCGTAGAATCTTCGTTGCTTCAGTGTATACGCACTTGATTACGTGCGACTTTCCACATCCAGCACCACCTGACACGAAGTAAAAAAACTGTTCTGGATTCAGTCCCCACACACGATTTTGACACCACTGCCGAATGGTGTAAAATATGGCTGCCTGTGTCTTGTTTAAACTCCGAAAGAGCTTCCTGACAAACTCGACACTCATCTGTGGCGCCTCTATGCGCGGTGCAACTCCATCGCCATCTTCATTACGAGGCTGGAATTCAGGGACCTCATCCTGTTCGTCGTCTTCCTCTGGACCGACGTCTTCTTGTTCAGCTATGCATTCCAGGCGATCCACTTCAACTTCTGGTGCAAAAGCTGTCCAAGCACTCTCAGATGGTCCTTCCTGCTGAAGTTGTTCAAATGCTTTATCTACAACTTTGCCGTGCTTTTCATATCTCTGCTGGTATGCCTTTACTATGCCGCAGACAGGGAACCGGAGACCAGGATGTCCAGGAAGTTCCACAAATCCGCTTTTATAAAATAGCTGATATGTGGGAAAATCCTCAGGTTTCAGCTCTTCATTGTGGCGATGGGGAACGTAAAGTTTCACCATTCTTCCATAAAATTTTTCCGGTTGCTTCTCCTCTGAAAAGCGAGCATATCGGATAACTGCAGGCTTGCCAACAGTCCTCTTTTGAATAAATCCCATATCATGAAGCAGTCGGAGGACATTTTTTCCTTTAATTTGCTGACCGTACACAACACGGTAATTGGATGCAAAGTCCGCAAGACACATTTTTTCAAACTCCAACGTTAGAGGTCTTGCTCTGTATTTTTCTATTAAACCTGACATCCAGACGTCCTCCGATTCAGGATTTTTGTTCAGCAACACACTTATGGGCAGACTCATCTTGAGGGCATCGTCATCCGTCGGAACAAACACAACACTTCGTGAACACTTCTTCAATGGCAAGCTGCATGTTCGCGCAACGGACTCCTGAGCGCTTACTTGCCGGTGCTTGGCATAGGCTTGCATTATGTGCTTCATTTCGTCCTCTTCATTAACGTTGGCTTCACGAACACTCTGGATCACGTTCTTAAGAAAGCCACTCATTTCATGCTCTGGCTTTGAAACGTAGGACAGCATATACATGATGCAGCTGTAAGCGTCTAGGATGTACTGAATATCCATGTTCGCATTCCACGCCCTGAGCAAATCAGGATTGTAGCCATTCACCCAAGTCTCCTTTGGATCACGCTTCAAAAGAACTGCACTGCCAGTGGTGAGTCCTTCAGCGTAGTTCAGGTAATCGTCCATGGACAAATTGCACTTGGTTAAAAGGTCTGACAAATTGTCGAGGGAAGATTTGGGATCATTCAGCAAATCCCACAAAGGCTTGAGTTTTGATTTGGCTTCATTCATTGCTTTTTTAGCCGCATCTCGCCTTGCTTTCTTCTTGGCTGCCGAGTCAGTAGGTTCATCATCCCCCTCATCAGGACGCTCTGGCATTGGATGAGTGATCATGGTCTTAGGCATTGGTAGTTTTGGAAATCCAAATCTACACACCACCTTGCCTTTCTTGCATGACTTTGAGTGGTTTTTGCTATGAAGCTGAACCTCTGTCACAATCTTATGAAGCTCAGGATCAACATTGGGATCTGGAAGCTTGCACGATACGTAACGGTCGATGAAGTCACAAATTGTCTCATCATTATCTTCCTCTGGATCTGGGGCATCCTTTACCCAAGCAAGCAGATGAATATGTGGGCTTCCTCTCGCCTGAAACTCCACTCTATAGAAGAAATCCTCCACTTCACCAATGGGTTGTGCAGGTGACAAAAGCAGGTGAGCCATTAATGCATCAACACGCTTCTCAAACATGCGCATGACAGTGACAGGATTACTCCTAAGGATTTCACATTTCGTCGCCCAGTCAAGCTGTGAAAAGTCAATTTCTTCGCCTTGTTGAGCTTTGATTACAGTCACAATCTCAGGCCATCGCATTTCTGCTGCACTGAATGTACAAAAGAAAGTAGGTGTCCCCAGCTGTCGAATCATGGCCTGGAGATCTCGCAACGTCTTCTCCCAATAGGCTGGAGAGCCTCTCAGGGGCTGCATGAATCGTGTGGCATCCCTGTTGTGAACAAGTCTCTCAACCTCATCTGAATCCTGAAGCATCCTATTGGAGATTCTTCTGCCATCTTTGGTAATGGGTTTACCTTTTCGAAGTTGAATGGACATGCTGTTTCTTGCCAGTTGCGTTTCTGTCACAAATTGTGCAAAGAAAAGGTAGGTTTGATCCCTTGCAAATCGGGCATCAACACAAAACAATCTGACGTTGAAGTACATGCTAGGAGAAACCGATGTCTGCCTTGCCTCGTCGATTGTGTTCTCTCCAGTGGGGAACTGGACAGGGAATGCCATGGCTTCCAGTTTTGGGATTTTAAAAAATCCAACAGGCTTCTTTCCTTGTGCAGGTGCGATACTAAAGATCCCTTCACCGTACGACAAGATGTCATGTGCAATGTCTGGTGGCTGCATGCACGTGTCCAATGTAAGACCGGGGCGAAGTTCATCCTTTTCCTCCACACTGACATGTTGCTCCTCGTGCTCAGCAGTGCCAACTTCTTGGTTATCCTCTGCTGCATCAATGTCTTCGTCAAACTGATCTTCAGATACCTCAGGCTCTTGTATGGAGATATCCTTGTACTCAGAATGCACTTCCTTCAGCTTGGATAAAGCTGCAATCACACTGTGCATATTTACAGTATGGAAATGCTGGTATCCCTTAAAACTGACATGTCTCTTCAATTTGACCTGTAGGAGCTGGGACTCACTTCTTGGTCTTGGCAGAGAGTTGACAGTGTTCTCCACCTCTGaaggcacacacacaacagcaccgTGAACTGCTCTCTGTTGTCCTTTGGGCAGTGCAACTATTTTTGCAAAAGGTAAAATTTTTGCGATAAGCTGACGTTCCAGCACATTTAACTCAGCCAATTCTGCAGGGATAGGTGGCAGTTCAAGCTTATTTACTGCTGCAATTGAAGGCATGCTCCCTCGTTTCAGATGGCTGTCACAAGTGTGGCAGATCCATTCCCGTCTTCTCTCTTCTGGAACGGTGCAATCATCTGAGCAGGCACTGTCACAAGTATGCACATACTTTCTGGTCAGGCAGAATGAGGAAAGTTGAACATCTTTTTCATAATTTGATCGATCACAAGCCTTGACCTGGTCCAGAAAGAGGACTCTGTGACAAACGGTGCAGACGTATGTAGGGCCTTGCTGAATCTTACACCGGAATGCATGAATTGCACTTTCCATCAGTTTGCTGACCAATGGCTGGACTGTTTCCAGGCTGGGGCGGATGCACATCTTGTATTTCCTTTTAATCGTCAGTGCACATTGCATCTGATGAAGAATACGTGATGTAGTATCAAACTTTTGTTTCTTACGGAGGGTACATTGAAGAATGTGATGTTCTCTAAACTCAGAATTATCCGCATATCTCCTCACCATGTATTCCTTCATTTTTTTCTGGAAAGCAGTATCGGTACAGTACCTCCTGAccatgtgtgcttttttttttgcctggAAGATGGTATCGGATCTGTACCTCCTAGCCATGTATTCTTTCCTCTTTAACGGTGCAACTGGATCTATTGTGTACCTCCTAGCCATGTATTGCTTCTTCTTTGACTGTACAATTGGATCTGTGGTGTACCTCCTAGCCATGTATTCTTTCTTCTTTGACTGTACAATTGGATCTGTGGTGTACCTCCTAGCCATGTATTCTTTCTTCTTTGACTGTACAACTGGATTTGTGGTGTACCTCCTAGCCATGTATTCTTTCTTCTTTGACTGTACAACTAGATCTTTGGTGTACCTCCTAGCCATGTATTCTTTCTTCTTTGACTGTACAACTGGATCTTTGGTGTACCTCCTAGCCATGTATTCTTTCTTCTTTGACTGTACAACTGGATCTGTGGTGTACCTCCTAGCCATAAATTCTTTCTTCTTTGACTGAACAATATCATCTTTGTATCGCATATTACTGTAgtctttctttttgtttctaaAGTGAGCATTTTGGTACTTCACCCAAACAGCCTCTTTCTTAGCTGCCCGATACTGCAAACAGGCAGCATACCGGTACCTCTCATCATCtctttgtttgtgttttctcATCATGTAAGATGCAGTTGTGTCCTTGGATTCTCTGCAATTTAAATTGGCAATTGTCTTTCGCATTTCTCTTCTTCTCCTggacttgtttttttttgctatcaGGGCTTGGTTTTCTCGGGCACCGCTATTTTGTACAGCAACATTTTCTTCTGGTTCTGGTAGAACTGAGATTACTTGTGAAAACTGAGCACAAGCTGAGAGTAATGGCTGCTGGCCAGCCCACTGCTCAGTTTCAAAAGAAACAGGCATGAATTCATAGCTTGCTCCATCACGGCGATCCTGAAAGAGCTCAAGAAGTTTATCGGTCATGTCACTTAGATGAGTAAAAGTTAACATGACAGCAGTTCCACATCCGGTCTTATCAGGCAAGCCTTCTGCAGTCCTTGAATGTGGATCAAAGAATCCATATCTGCCTGATCCATCTCTAAACAATGCAATGCATTCTGGAGAAACGATTAAAAGTGCAAATGTGACATCTGCTGCGAGACACTGCAATCTTTCAGCAAGAGGCAAAAACCAATCTTCCATATCAGGGGCACCTTTGGCTTTGAGTAATCCAAGTTTGACTTCAGACTTGTGAACATTGTATGTTCGGTTAAATGTTGTAAGTTCAGAAGGTATTTCCTCCATGGACAGATGGTCATTAAGGAATCTTCTTTCACTGATAAGCTGCATTTTAACGCTGACATACAAAGCATCCCCCTCTTCTAAAACTCTATCAAGATCGGACATCTTGAACTGAAGCCCTGCACTGTGACTGGCCAAAAATGTCAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00001586 lncRNA downstream 25857 8550017 ~ 8553298 (-) False XLOC_000999
TCONS_00001584 lncRNA downstream 33796 8543687 ~ 8545359 (-) False XLOC_000999
TCONS_00001583 lncRNA downstream 35544 8543152 ~ 8543611 (-) False XLOC_000999
TCONS_00001581 lncRNA downstream 69089 8506422 ~ 8510066 (-) True XLOC_000998
TCONS_00003332 lncRNA downstream 71466 8504977 ~ 8507689 (-) False XLOC_000998
TCONS_00002917 lncRNA upstream 25216 8612575 ~ 8624942 (-) False XLOC_001002
TCONS_00001589 lncRNA upstream 28176 8615535 ~ 8618644 (-) False XLOC_001002
TCONS_00001590 lncRNA upstream 28494 8615853 ~ 8625266 (-) False XLOC_001002
TCONS_00003335 lncRNA upstream 35343 8622702 ~ 8624882 (-) True XLOC_001002
TCONS_00001597 lncRNA upstream 62750 8650109 ~ 8652648 (-) False XLOC_001004
TCONS_00001588 mRNA downstream 12588 8555323 ~ 8566567 (-) True XLOC_001000
TCONS_00001582 mRNA downstream 25860 8539671 ~ 8553295 (-) False XLOC_000999
TCONS_00001585 mRNA downstream 25990 8549849 ~ 8553165 (-) False XLOC_000999
TCONS_00001579 mRNA downstream 150394 8415983 ~ 8428761 (-) False XLOC_000997
TCONS_00001591 mRNA upstream 50803 8638162 ~ 8646941 (-) True XLOC_001003
TCONS_00001592 mRNA upstream 61740 8649099 ~ 8652732 (-) False XLOC_001004
TCONS_00001593 mRNA upstream 62545 8649904 ~ 8651718 (-) False XLOC_001004
TCONS_00001594 mRNA upstream 62737 8650096 ~ 8652655 (-) False XLOC_001004
TCONS_00001596 mRNA upstream 62837 8650196 ~ 8652648 (-) False XLOC_001004
TCONS_00001587 other downstream 25857 8552750 ~ 8553298 (-) True XLOC_000999
TCONS_00001570 other downstream 603386 7970406 ~ 7975769 (-) True XLOC_000989
TCONS_00001564 other downstream 658949 7920119 ~ 7920206 (-) True XLOC_000985
TCONS_00001563 other downstream 659588 7919480 ~ 7919567 (-) True XLOC_000984
TCONS_00001562 other downstream 660273 7918795 ~ 7918882 (-) False XLOC_000984
TCONS_00001595 other upstream 62750 8650109 ~ 8652655 (-) False XLOC_001004
TCONS_00001610 other upstream 530741 9118100 ~ 9118671 (-) False XLOC_001012
TCONS_00001617 other upstream 610500 9197859 ~ 9197966 (-) True XLOC_001018
TCONS_00001629 other upstream 872651 9460010 ~ 9486080 (-) False XLOC_001025
TCONS_00001646 other upstream 1153443 9740802 ~ 9816875 (-) True XLOC_001029

Expression Profile

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