RNA id: CI01000325_02897237_02903784.mRNA



Basic Information


Item Value
RNA id CI01000325_02897237_02903784.mRNA
length 1902
RNA type mRNA
GC content 0.40
exon number 3
gene id CI01000325_02897237_02903784
representative True

Chromosome Information


Item Value
chromosome id CI01000325
NCBI id null
chromosome length 10587162
location 2895972 ~ 2903929 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CCATAAAAGGCCCCGTTTCCCACTATCTTACCCCAGAGTCCCTGCTGCCCTGAGGGCCATAGAAGGGCTCCATTGTGTGGAGAAAGGCACCTGGTTTTGGTTAGTGCCAAACTGGATACACTCTCACACACACTCACAGTAACACACACAGCAGGGTCAGCTCCCTCTAGAGGCCCATCTGGAGTTAATTTCCTGTCAGAGACAGCAAGCCATTACAGGCGTGGTCTGGCAGCCACTTGTGATTGGATGAGAGACAAAGGGTGGAGCAAAACTACACGGTCATTTCGATTATTGGCTTATTTGCTTTCTTTTTAGGAATTTTGTGCAATTTCGAGTGTTTACATTGCATGCATTACAGCATTACATTTACATTGCATGTTTTATCATTTGTATAGAGTGCAACAGTCGGGTTCTGGAAGTAAAACTCCCGATTCATTTTCTCCGTAAAGGAATTGGTTTTGAGCGATAACCTTTAAAGACAGACCTACTGTGAGCAAAGAGGTTGTTAATTGATGATATATGCTTTTTGTTGAAGCCATCAGTCTGCATTATTTCAGCTTATTGTTCAAACAATCATATGTAACAGTTGAATTCCTCTTGAAAAACTACATTACCCATGATTCTGCAGAGAAATCTCCACCAATTTGAGAATGTTAGTGTCGGCCACTCCCATTCAGCATTGTGAATGATGTAGTTAGTTTCCCTATACTCTCAAACATATATTTGTACGCATTACATGCATATTTTGCAATAACCGTAAAGTATTTTGTTTGTGTTTATATATATATATATATATATAATATTATGTATGTGTGTGTGTGCATTTTTTTTTTTTTTTTGAGAAAGTAAAAATGTGCACAGTTTCCTGTGATGGGTAGGTTTAGGGGTAAGGTTGGTGTAGGGCAATAGAAAATACGGTTTGTACAGTATAAAAACCATTACGCCTATGGAATGTCCCCACAATTCAAAAAAACAAACGTGTGTGTGTGTGTCATTCGCGACGCTTCATGGGTTCGTTCTCTTATTAAAGCCGTTAAGTAAACAGTCCTTTACCTTTGTCTTTATGTCTGATTTTCAAATACTTTTTTTGCTTCAAATCAGTTTGCAGTGTTGTGATTCACCTTGTAGCTGGTTGGTTTGGTTCATGGCTTATAACTCTTAAATGAAGACTTTTTTAGAATCCTTATTTGAAAAATGAATTGGAAAAATACTTGCGGAACCAAGGTTGCTGAAAAAGTGGATGGGCACTTGCACTCTATTCTAAAATGGCCAATTTCCCCTCAGAAATCTGTGAATCTCTTGGGCTAAAACGATTACTGCTGCAGACCAGTGATATCACTTATATTATCACAGTCCAAAAAGTCATGAGAAAAGTGGACATTCTACATTCTACAATCAGATTTTTTGATCAGTCTGATGAGAAATCTCATCCACTAAAGCGGGCCTTGGGGGACTCCGACCTGGCAGAGGTTCTGAAACAACTTCTTCCCCTCATAAAGTCCAGTGAGTCTGGAACAGGTTCTGACTCTAACTCTGGCTCTGGTGAGCTGAGCATGGATGATCTTCTGGTGCTGCTGGTTTATGTGTACTCTATGGCCCAGGAAGCATGTCCGGGTGGTGCTGACGAGGAAAAGCATGTGGAGAAGGTGGAGAAGGAATTGATTGGCGCATTGACACTCCTACTCACCCGGCAGACCACATTAAGCCATCTGCTGCAGGAGATCACAGGTCAGTGGTGGAATACTAGTTCAACATGATCCCAGTACCATTATACTAAGTCAGTTAGTTAGTAATGATATACTGTCACTGAGTTTCCACATCATTGAGTGACTTCATGAAGCTGTCATGCCTATAATCTCTGTGTAGCACACTAGTGATTAGTGCTGGAATATTTAAACAACA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU532327 lncRNA upstream 153070 2742648 ~ 2742902 (+) True G463731
TU532323 lncRNA upstream 164251 2731499 ~ 2731721 (+) True G463727
TU532321 lncRNA upstream 166993 2728779 ~ 2728979 (+) True G463725
TU532312 lncRNA upstream 186316 2709277 ~ 2709656 (+) True G463716
TU532305 lncRNA upstream 219692 2675796 ~ 2676280 (+) True G463709
TU532369 lncRNA downstream 128481 3032410 ~ 3033231 (+) True G463771
TU532371 lncRNA downstream 155856 3059785 ~ 3060011 (+) True G463773
TU532374 lncRNA downstream 182733 3086662 ~ 3086962 (+) True G463776
TU532375 lncRNA downstream 188697 3092626 ~ 3092833 (+) True G463777
TU532376 lncRNA downstream 191024 3094953 ~ 3095183 (+) True G463778
CI01000325_02834936_02881751.mRNA mRNA upstream 13938 2834416 ~ 2882034 (+) True CI01000325_02834936_02881751
CI01000325_02767014_02793768.mRNA mRNA upstream 101746 2765577 ~ 2794226 (+) False CI01000325_02767014_02793768
CI01000325_02751187_02751618.mRNA mRNA upstream 144289 2750334 ~ 2751683 (+) True CI01000325_02751187_02751618
CI01000325_02618395_02618952.mRNA mRNA upstream 276892 2617406 ~ 2619080 (+) True CI01000325_02618395_02618952
CI01000325_02484476_02491983.mRNA mRNA upstream 403746 2484476 ~ 2492226 (+) True CI01000325_02484476_02491983
CI01000325_02968026_02987575.mRNA mRNA downstream 64097 2968026 ~ 2988001 (+) True CI01000325_02968026_02987575
CI01000325_03041882_03051690.mRNA mRNA downstream 137953 3041882 ~ 3051927 (+) True CI01000325_03041882_03051690
CI01000325_03097491_03100127.mRNA mRNA downstream 193562 3097491 ~ 3100321 (+) True CI01000325_03097491_03100127
CI01000325_03102298_03105905.mRNA mRNA downstream 198369 3102298 ~ 3105905 (+) True CI01000325_03102298_03105905
CI01000325_03106141_03113715.mRNA mRNA downstream 202212 3106141 ~ 3114110 (+) True CI01000325_03106141_03113715
TU532320 other upstream 167522 2728206 ~ 2728450 (+) True G463724
TU532139 other upstream 332237 2563155 ~ 2563735 (+) True G463566
TU531417 other upstream 895088 2000477 ~ 2000884 (+) True G462928
TU531262 other upstream 999157 1828082 ~ 1896815 (+) True G462778
TU531214 other upstream 1275778 1617596 ~ 1620194 (+) True G462730
TU533681 other downstream 2154527 5058456 ~ 5090938 (+) True G464950
TU533890 other downstream 2648191 5552120 ~ 5554577 (+) True CI01000325_05549713_05553140
TU534591 other downstream 2751483 5692780 ~ 5693983 (+) True G465727
TU535096 other downstream 3594837 6498766 ~ 6501978 (+) True G466144
TU535088 other downstream 3713271 6617200 ~ 6619471 (+) False G466137

Expression Profile