Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00020174 |
| length | 598 |
| lncRNA type | retained_intron |
| GC content | 0.45 |
| exon number | 2 |
| gene id | XLOC_010180 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007127.7 |
| NCBI id | CM002900.2 |
| chromosome length | 55266484 |
| location | 41873708 ~ 41897745 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0086091 | regulation of heart rate by cardiac conduction | biological_process |
| GO:0086002 | cardiac muscle cell action potential involved in contraction | biological_process |
| GO:0006811 | ion transport | biological_process |
| GO:0006814 | sodium ion transport | biological_process |
| GO:2000649 | regulation of sodium ion transmembrane transporter activity | biological_process |
| GO:0001518 | voltage-gated sodium channel complex | cellular_component |
| GO:0005887 | integral component of plasma membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0017080 | sodium channel regulator activity | molecular_function |
| GO:0019871 | sodium channel inhibitor activity | molecular_function |
| GO:0005248 | voltage-gated sodium channel activity | molecular_function |
| GO:0044325 | ion channel binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-060503-604 | Contributes to voltage-gated sodium channel activity. Acts upstream of or within sodium ion transport. Predicted to be integral component of plasma membrane. Predicted to be part of voltage-gated sodium channel complex. Is expressed in gill; heart; liver; musculature system; and nervous system. Human ortholog(s) of this gene implicated in Brugada syndrome 5; developmental and epileptic encephalopathy 52; familial atrial fibrillation; and generalized epilepsy with febrile seizures plus 1. Orthologous to human SCN1B (sodium voltage-gated channel beta subunit 1). |
| ensembl_id | ENSDART00000131491 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00022011 | lncRNA | upstream | 34761 | 41837291 ~ 41839073 (+) | True | XLOC_010179 |
| TCONS_00020164 | lncRNA | upstream | 400516 | 41465511 ~ 41473318 (+) | True | XLOC_010173 |
| TCONS_00021747 | lncRNA | upstream | 725671 | 41142659 ~ 41148163 (+) | True | XLOC_010170 |
| TCONS_00021746 | lncRNA | upstream | 729718 | 41142659 ~ 41144116 (+) | False | XLOC_010170 |
| TCONS_00021745 | lncRNA | upstream | 729718 | 41142659 ~ 41144116 (+) | False | XLOC_010170 |
| TCONS_00020182 | lncRNA | downstream | 177285 | 42066582 ~ 42073705 (+) | True | XLOC_010183 |
| TCONS_00022012 | lncRNA | downstream | 201009 | 42090306 ~ 42096260 (+) | True | XLOC_010184 |
| TCONS_00021748 | lncRNA | downstream | 447948 | 42337245 ~ 42337549 (+) | True | XLOC_010186 |
| TCONS_00020184 | lncRNA | downstream | 574712 | 42464009 ~ 42470146 (+) | False | XLOC_010187 |
| TCONS_00022013 | lncRNA | downstream | 574925 | 42464222 ~ 42470146 (+) | False | XLOC_010187 |
| TCONS_00020172 | mRNA | upstream | 35066 | 41826584 ~ 41838768 (+) | False | XLOC_010179 |
| TCONS_00020170 | mRNA | upstream | 141375 | 41717313 ~ 41732459 (+) | False | XLOC_010178 |
| TCONS_00020171 | mRNA | upstream | 143354 | 41717315 ~ 41730480 (+) | True | XLOC_010178 |
| TCONS_00020169 | mRNA | upstream | 192088 | 41668564 ~ 41681746 (+) | True | XLOC_010177 |
| TCONS_00020168 | mRNA | upstream | 198836 | 41668474 ~ 41674998 (+) | False | XLOC_010177 |
| TCONS_00020178 | mRNA | downstream | 85141 | 41974438 ~ 41984133 (+) | True | XLOC_010181 |
| TCONS_00020179 | mRNA | downstream | 128744 | 42018041 ~ 42046881 (+) | False | XLOC_010182 |
| TCONS_00020180 | mRNA | downstream | 128745 | 42018042 ~ 42046880 (+) | False | XLOC_010182 |
| TCONS_00020181 | mRNA | downstream | 129070 | 42018367 ~ 42046881 (+) | True | XLOC_010182 |
| TCONS_00020183 | mRNA | downstream | 381202 | 42270499 ~ 42308680 (+) | True | XLOC_010185 |
| TCONS_00020166 | other | upstream | 325397 | 41546763 ~ 41548437 (+) | True | XLOC_010175 |
| TCONS_00020157 | other | upstream | 819602 | 41042310 ~ 41054232 (+) | False | XLOC_010166 |
| TCONS_00020150 | other | upstream | 1288058 | 40576679 ~ 40585776 (+) | False | XLOC_010161 |
| TCONS_00020144 | other | upstream | 1524880 | 40346595 ~ 40348954 (+) | True | XLOC_010157 |
| TCONS_00020142 | other | upstream | 1526458 | 40346447 ~ 40347376 (+) | False | XLOC_010157 |
| TCONS_00020194 | other | downstream | 883415 | 42772712 ~ 42781394 (+) | False | XLOC_010194 |
| TCONS_00020198 | other | downstream | 987149 | 42876446 ~ 42878011 (+) | True | XLOC_010197 |
| TCONS_00020200 | other | downstream | 1009132 | 42898429 ~ 42898510 (+) | False | XLOC_010198 |
| TCONS_00020214 | other | downstream | 2716029 | 44605326 ~ 44605440 (+) | True | XLOC_010211 |
| TCONS_00020216 | other | downstream | 2793768 | 44683065 ~ 44687935 (+) | True | XLOC_010212 |
