RNA id: TCONS_00020180


Basic Information

Item Value
RNA id TCONS_00020180
length 2782
RNA type mRNA
GC content 0.47
exon number 9
gene id XLOC_010182
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 42018041 ~ 42046881 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGCACACAAGTCGATGCGTTTCAGCCGGGTTATCAAAGTACCTGGGTTTACATAGCTCAAGTTTAACCAAGTACTTTCTTCATGAACTCCACAGAAATCTGCAATGGACTGTACTATTAAGGAAGCTCTATCGGTGGTGAGTGAAGACCAGTCCATATTCGAGTCACCCTTCAGTGGTCCCCAGGCCATGCACATGAAGGCAGAGATCGGCTCGCCTGCGGTGTTCAGACAGGCTTCAGAAGAAAGCATCGAACCCACTGAACCAGACTGGAGCGGATCGGCAGCACAAAACTCTGCCAAAAGAGCAGAACACATCAACGGGACCAGCCATGAGTCCCCAGTGGACTGTAGTGTGACTAAAAGGACTCGACACATGAGTAACAGTGATGGAGGACAGTTGTCTTACCAGGCCTCGTACCCAGAGCCCCGCAGCAGCCCACAGACGGCCACACCACCCAGCAGCACCACAGAGGAGAAGAGGGTCATCGTACCAGCCGACCCAGAGGTTTGGACACAAGACCACGTGCGGCAGTGGGTGGACTGGGCCATAAAGGAATACGCGCTGTCCGATGTGGACGTGTCCCTCTTCCAGACCCTGGATGGAAAAGCGCTCTGCAAATTGAGCAAAGAGGACATGATGCGCATCACCTCCGCATACAACACAGACATCCTGCTCTCCCATCTCAACTACCTCCGGGAGAGTAGTCCCACTTTTTCCTACCCAACAAATCCAACTAATACACAACCACAACCTCGAGTACAGGTAAAAGCCGCAGAAAACAGCTTTGAGGAGATCGGCAGGAGGAACAGTTGGTCCTCAAGTGGATTGCCAGCTGTCCCTAAAGGATCTCCAATTGAACATCAGCACAATACCAGAATTACAGAGCCGCCTCCAAGACTTCCACAAGACCCCTACCAAGCATTAGGTTCCATCAGCAGTCGTCTTGCAAACCCAGGCTCTGGTCAGATCCAGCTGTGGCAGTTCTTACTGGAGTTGCTTTCCGACAGCAACAACTCGACCATCATCACCTGGGAGGGAACTAATGGGGAATTCAAGATGACAGACCCTGATGAGGTGGCCAAACGCTGGGGGGAGCGAAAAAGCAAGCCTAACATGAACTACGACAAGCTCAGCCGTGCCCTTCGCTACTACTACGACAAAAACATCATGACCAAAGTGCACGGCAAACGCTACGCATACAAATTCGACTTCCAGGGCATCTCCCAAAGTCACCAAAACCACTCCACAGAGGGAAGCGTGTATAAATTCCAGACCGAAGGGTCGTACATGCAGAGCTACCACAGCCACCAGCCAAAAATGAACTTCATAAGCCCACATTCCACCCCTATGTCTGTTACAACTAGTAATTTCTTCACGCCTCAATCCACCTACTGGAACTCCGCAACCAGTGTGGTTTATCCCAGTTCACCGATGCCACGACATCCCAGCACTCACACTCACTTGAACACTTATTATTAAAACAGTCACATTGTAAAGCCAACATTGGCTTCTTTGTTGACaactcttaaagagacagttcacccaaaattgtacTCTATTTCCCCCattcttgacttgttccaaacattcTTTACACTATTAAAcataaaagatatttttaatatagcAGAAAACCTGTTAACACtgacttccgtagtatttgtttttcctgctatggaagtcagttgTTTTTACagctttctttcattcattttcatccgcttttccAGGGTCGGGTCACAGGGGTGGTAgtagagaaccccagacttccctctccccagacttcatccagctcctccgggggggatCCCGAGGTTTTCTCAGgtcagctgagagacatagtctctCCAGTGTGTCTTGAGTCTTCCCTGAGGcttcctcccggtgggacatgcatggaacacctccctaggaaggcatccaaaacagatgcctgagccacctcagctgacttctctcggtGTGGAGAACCAGTGGCTCAACTCCAAGCTCCTatcgggtgacagagctcctcaccctcaCTATAAGGGTGCGcactgtgaaggaaactcattgcggctgcttgtatccaagatcttgtcctttcggtcataaCCCAAAACTCATgagcataggtgagagtaggaaaatagattgaccggtaaatcaaaaGCTTTGCCTTTAAGCTCAGCTCATTTACCACAACGGACAGATACAGTCCCCATTACTGCTGCCACTTCactgatccgcctgtcaatctcgtTTTCCATTCTTctctcactcatgaacaaaacctcaagatacttgaactcctccacctggggtaaggactttcctccaacctggagatccagctttctttaaaatatattattttgtgtccaacagagtAAACAAATTCAAACAGTTCTGGaaaaagtaaaggatgagtaaatgagttTTAAGTTTGTGGGAAATAACAAACTGGCAACATTTCTTGAACAACAAATGACAAGAAACCACCCTCTGTAGCAGATCTAAATACCATTATTATTCAGTAGTATTGTTGTACAGTATATAAGCATGTTAAACAACTGCACCCCTTAGGGTTATATTGTAAATATGTTTTGCATGTTTCATAAGAATGCTCTGACATCACATGCATGTATACTCAACCCTGAtgctttaaaatgtaacattCCTTTGTATGCTTGTGTTCTTGTACAGGTTGCTTGTGGTATGTTACCAAGTTGAATGGTAATCATCACCTTTACACTGTAAGCGTTAcattatattacaaaataaaactgataaacgGCTGC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000102789

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020174 lncRNA upstream 128745 41873834 ~ 41889297 (+) False XLOC_010180
TCONS_00022011 lncRNA upstream 178969 41837291 ~ 41839073 (+) True XLOC_010179
TCONS_00020164 lncRNA upstream 544724 41465511 ~ 41473318 (+) True XLOC_010173
TCONS_00021747 lncRNA upstream 869879 41142659 ~ 41148163 (+) True XLOC_010170
TCONS_00021745 lncRNA upstream 873926 41142659 ~ 41144116 (+) False XLOC_010170
TCONS_00020182 lncRNA downstream 19702 42066582 ~ 42073705 (+) True XLOC_010183
TCONS_00022012 lncRNA downstream 43426 42090306 ~ 42096260 (+) True XLOC_010184
TCONS_00021748 lncRNA downstream 290365 42337245 ~ 42337549 (+) True XLOC_010186
TCONS_00020184 lncRNA downstream 417129 42464009 ~ 42470146 (+) False XLOC_010187
TCONS_00022013 lncRNA downstream 417342 42464222 ~ 42470146 (+) False XLOC_010187
TCONS_00020178 mRNA upstream 33909 41974438 ~ 41984133 (+) True XLOC_010181
TCONS_00020176 mRNA upstream 120297 41873834 ~ 41897745 (+) False XLOC_010180
TCONS_00020175 mRNA upstream 120462 41873834 ~ 41897580 (+) False XLOC_010180
TCONS_00020173 mRNA upstream 120463 41873708 ~ 41897579 (+) False XLOC_010180
TCONS_00020183 mRNA downstream 223619 42270499 ~ 42308680 (+) True XLOC_010185
TCONS_00020185 mRNA downstream 417733 42464613 ~ 42470146 (+) False XLOC_010187
TCONS_00020186 mRNA downstream 418638 42465518 ~ 42470156 (+) True XLOC_010187
TCONS_00020187 mRNA downstream 424575 42471455 ~ 42472987 (+) True XLOC_010188
TCONS_00020188 mRNA downstream 430275 42477155 ~ 42477952 (+) True XLOC_010189
TCONS_00020166 other upstream 469605 41546763 ~ 41548437 (+) True XLOC_010175
TCONS_00020157 other upstream 963810 41042310 ~ 41054232 (+) False XLOC_010166
TCONS_00020150 other upstream 1432266 40576679 ~ 40585776 (+) False XLOC_010161
TCONS_00020144 other upstream 1669088 40346595 ~ 40348954 (+) True XLOC_010157
TCONS_00020142 other upstream 1670666 40346447 ~ 40347376 (+) False XLOC_010157
TCONS_00020194 other downstream 725832 42772712 ~ 42781394 (+) False XLOC_010194
TCONS_00020198 other downstream 829566 42876446 ~ 42878011 (+) True XLOC_010197
TCONS_00020200 other downstream 851549 42898429 ~ 42898510 (+) False XLOC_010198
TCONS_00020214 other downstream 2558446 44605326 ~ 44605440 (+) True XLOC_010211
TCONS_00020216 other downstream 2636185 44683065 ~ 44687935 (+) True XLOC_010212

Expression Profile

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