RNA id: TCONS_00020183



Basic Information


Item Value
RNA id TCONS_00020183
length 471
RNA type mRNA
GC content 0.41
exon number 25
gene id XLOC_010185
representative True

Chromosome Information


Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 42270499 ~ 42308680 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


gtcagctggaaaagggtttTGGGTAAACATATAGGCAGgttcacacagctacattacacatcaatgagctcaagcgcatcaaatgtgaAATGTCTTGAAGGGGCGGGGAATgtattaaattGGACAACAGTTGTACAgGAGTTCAGCGGAGGACGGCTGCCAAACGCTCCCCGAGGAATTTGGGTTggtgggtcagtcggtcataatagcatcaatgttgtgatgaagATTGGGctcaagtcagaattattacccctaACTtccaaacatttgtcaagcaacaagacttttgtcagTATTAAGgGAAACCTTGGAAATGGACCATCTGCCTTGATTGGTGTACTAAATATTTATGCTCTCTTTGCCAAGCCTGAAATAcaaacaataataagaGAATTAGcaataacaggttcaacaaaagaaagaaactcaaTTCATAATCATGTAGAAAGGCGCTCGGGAAATGAAATC

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000187803

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00022012 lncRNA upstream 174239 42090306 ~ 42096260 (+) True XLOC_010184
TCONS_00020182 lncRNA upstream 196794 42066582 ~ 42073705 (+) True XLOC_010183
TCONS_00020174 lncRNA upstream 381202 41873834 ~ 41889297 (+) False XLOC_010180
TCONS_00022011 lncRNA upstream 431426 41837291 ~ 41839073 (+) True XLOC_010179
TCONS_00020164 lncRNA upstream 797181 41465511 ~ 41473318 (+) True XLOC_010173
TCONS_00021748 lncRNA downstream 28565 42337245 ~ 42337549 (+) True XLOC_010186
TCONS_00020184 lncRNA downstream 155329 42464009 ~ 42470146 (+) False XLOC_010187
TCONS_00022013 lncRNA downstream 155542 42464222 ~ 42470146 (+) False XLOC_010187
TCONS_00022014 lncRNA downstream 212026 42520706 ~ 42521936 (+) True XLOC_010191
TCONS_00022015 lncRNA downstream 382379 42691059 ~ 42693663 (+) True XLOC_010193
TCONS_00020179 mRNA upstream 223618 42018041 ~ 42046881 (+) False XLOC_010182
TCONS_00020181 mRNA upstream 223618 42018367 ~ 42046881 (+) True XLOC_010182
TCONS_00020180 mRNA upstream 223619 42018042 ~ 42046880 (+) False XLOC_010182
TCONS_00020178 mRNA upstream 286366 41974438 ~ 41984133 (+) True XLOC_010181
TCONS_00020176 mRNA upstream 372754 41873834 ~ 41897745 (+) False XLOC_010180
TCONS_00020185 mRNA downstream 155933 42464613 ~ 42470146 (+) False XLOC_010187
TCONS_00020186 mRNA downstream 156838 42465518 ~ 42470156 (+) True XLOC_010187
TCONS_00020187 mRNA downstream 162775 42471455 ~ 42472987 (+) True XLOC_010188
TCONS_00020188 mRNA downstream 168475 42477155 ~ 42477952 (+) True XLOC_010189
TCONS_00020189 mRNA downstream 172767 42481447 ~ 42494345 (+) False XLOC_010190
TCONS_00020166 other upstream 722062 41546763 ~ 41548437 (+) True XLOC_010175
TCONS_00020157 other upstream 1216267 41042310 ~ 41054232 (+) False XLOC_010166
TCONS_00020150 other upstream 1684723 40576679 ~ 40585776 (+) False XLOC_010161
TCONS_00020144 other upstream 1921545 40346595 ~ 40348954 (+) True XLOC_010157
TCONS_00020142 other upstream 1923123 40346447 ~ 40347376 (+) False XLOC_010157
TCONS_00020194 other downstream 464032 42772712 ~ 42781394 (+) False XLOC_010194
TCONS_00020198 other downstream 567766 42876446 ~ 42878011 (+) True XLOC_010197
TCONS_00020200 other downstream 589749 42898429 ~ 42898510 (+) False XLOC_010198
TCONS_00020214 other downstream 2296646 44605326 ~ 44605440 (+) True XLOC_010211
TCONS_00020216 other downstream 2374385 44683065 ~ 44687935 (+) True XLOC_010212