RNA id: TCONS_00020198


Basic Information

Item Value
RNA id TCONS_00020198
length 866
RNA type processed_transcript
GC content 0.46
exon number 2
gene id XLOC_010197
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 42876446 ~ 42878011 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttgtgaaaagggtgtaattgttaaaaataggtacaaacataagatataaacaaaaacctaaacaaacacttctatgtacataacgtcataaaaatacttgttttatttacctcgcgctgccgtccttgtactgccgtgaacaggaaattctgggaatggaggacggagagttgaatcgattcgtcttcaacaaaccgatcagtgtgacatcaaaacatcgcgagaacaacagacagctccgtgtgcatttgaatccatctcgcgatattgtatcacttcaggtacgcgcctactgattcgttgattcaaacgagttgtgaatcaagaagcctctaaagatccgaatcaaactgcagcagcacgccacgaggttttgctcagacttttgggacgtttggaattgctccgtcttgtcaccatgtaacacatagcagcaagacccatgggatttcatcagccactcaccatcagagtcctcagtggaagctgagaagagcagaagaggaagccaagcaagagatgccagaaaaaaagggggaaggaaataatgtgttatttagctgtttgagtataggcaggcgcagtgggtagcacaatcgcctcacagcaagaaggtcgctggttcgagcctcggctgggtcagttggcatttctgtgtggagtttgcatgttctccccatgttagcgtgggtttcctccgggtgctcccacaagtccaaaaatatgtggtgacattgggtaaggtaaaattgtccgtagtgtatgtgtgtgaatgagtatgtatggatgtttcccagtgatgggttgcagctgggtggcaacacggtggcacagtaggtagtgctgtttcctcacatcaagaaggt

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000153952

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022016 lncRNA upstream 75715 42795604 ~ 42800731 (+) True XLOC_010195
TCONS_00020192 lncRNA upstream 94671 42772668 ~ 42781775 (+) False XLOC_010194
TCONS_00020195 lncRNA upstream 94999 42776393 ~ 42781447 (+) True XLOC_010194
TCONS_00020193 lncRNA upstream 101863 42772681 ~ 42774583 (+) False XLOC_010194
TCONS_00022015 lncRNA upstream 182783 42691059 ~ 42693663 (+) True XLOC_010193
TCONS_00020199 lncRNA downstream 19571 42897582 ~ 42901740 (+) False XLOC_010198
TCONS_00022017 lncRNA downstream 19619 42897630 ~ 42901740 (+) False XLOC_010198
TCONS_00020201 lncRNA downstream 20464 42898475 ~ 42900680 (+) True XLOC_010198
TCONS_00022019 lncRNA downstream 163494 43041505 ~ 43048279 (+) False XLOC_010199
TCONS_00022018 lncRNA downstream 163494 43041505 ~ 43048279 (+) False XLOC_010199
TCONS_00020196 mRNA upstream 33049 42829735 ~ 42843397 (+) False XLOC_010196
TCONS_00020197 mRNA upstream 33476 42830152 ~ 42842970 (+) True XLOC_010196
TCONS_00020191 mRNA upstream 192945 42667560 ~ 42683501 (+) True XLOC_010192
TCONS_00020190 mRNA upstream 381063 42482270 ~ 42495383 (+) True XLOC_010190
TCONS_00020189 mRNA upstream 382101 42481447 ~ 42494345 (+) False XLOC_010190
TCONS_00020202 mRNA downstream 199898 43077909 ~ 43118095 (+) True XLOC_010200
TCONS_00020203 mRNA downstream 261493 43139504 ~ 43150489 (+) True XLOC_010202
TCONS_00020204 mRNA downstream 274716 43152727 ~ 43284939 (+) False XLOC_010203
TCONS_00020205 mRNA downstream 274728 43152739 ~ 43159418 (+) False XLOC_010203
TCONS_00020206 mRNA downstream 341352 43219363 ~ 43243567 (+) True XLOC_010203
TCONS_00020194 other upstream 95052 42772712 ~ 42781394 (+) False XLOC_010194
TCONS_00020166 other upstream 1328009 41546763 ~ 41548437 (+) True XLOC_010175
TCONS_00020157 other upstream 1822214 41042310 ~ 41054232 (+) False XLOC_010166
TCONS_00020150 other upstream 2290670 40576679 ~ 40585776 (+) False XLOC_010161
TCONS_00020144 other upstream 2527492 40346595 ~ 40348954 (+) True XLOC_010157
TCONS_00020200 other downstream 20418 42898429 ~ 42898510 (+) False XLOC_010198
TCONS_00020214 other downstream 1727315 44605326 ~ 44605440 (+) True XLOC_010211
TCONS_00020216 other downstream 1805054 44683065 ~ 44687935 (+) True XLOC_010212
TCONS_00020217 other downstream 1826361 44704372 ~ 44705154 (+) True XLOC_010213
TCONS_00020228 other downstream 2710203 45588214 ~ 45588330 (+) True XLOC_010221

Expression Profile

//