RNA id: TCONS_00022022


Basic Information

Item Value
RNA id TCONS_00022022
length 2422
lncRNA type antisense_over
GC content 0.35
exon number 2
gene id XLOC_010199
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 43041505 ~ 43048279 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tgaaaaatatactcCCCCTCAAGTTGTTTatgacctttatgattttttttatatattaaacacGAGCAGATATTCTGaagctggaaactggtaaccactgacatcaatagtaggaaaaaataatactaaaaaagaaataaaaatatgtcagtggttaccagtttccagcatGTTGCTAAATCTTACTAGATCTTGCTAGATCTTTACTTTGGCTCACATCAAAAtagcaatcagaaaaaaaatactcaTAATTGCAAATTATGCTTAATTGCCTTAGGGACTTAttatattttgtctttaaacaaatgtaatgacaTTAAATGAGCGACTTTAGCTTGTTGACAAGCCttggcttcattcattcattttcctacagcTTAGGATCtgattaatcagaggtcgccacagtggaatgaactgctgactattccagcatatatttttgcccttcctgccacaacccagtactgggaaacatacactctcgcattcacacactatagccaatttagtttattcaattcacctatagcacatgtatcTGGacaggaaaccggagcactccaacatgcaaactccacacagaaatgccaactgacccagccgggactcagcgactttcttgctgtgaggtgacagtgctaaccattgagccactgtgccacttgCCTTGGCTTCGATGAACAATTAAAGTGAGATAGATAGTTattcatacaaacaaacaaacaaagaaaaaaaataattaacattaattgcAAAAGTCATTTAGCATTTTCCTGAGTTATTAATTATAAACTTTAAAGTAGACGCCCATTGAATCAAGGCTTTGAGTCTCACAGTGTTTACAATATTCACTGTATAAATGTCCcatattgcattattatttaaaatcttttaatgaaatgtttgTCCACTCAAAGTCTTTTAGAAACGTTTTGTCAGCTGAACATTGAGACGAGTTGTTttaaatgagtacacctcatttacaaaataatatatttttttttatccagtgcatatgtaggcaatgtattttggtgcagttgaacaaaacagatttattaaacagatatatttactaaaaattatatgtttcagtttactataatCTACTATGtgatgctgctttgacacaatctacattgtaaaagtgctaaacaaataaagaggaattgaattgaatatttaagtcaccaaacatgtttagaaattgaaagataatacaattaaattcaagaaaaattttgcaaaaaaagaaaaaaagaaaaaatgtaacattataatatttgttgtttcttttgatttttccttttaatgcatttaaaaatatattttagatagataagatatatttatatagatatagatatagatatatttagatatattttatatttaaaatagatttgtgaggggtgtattcatttatgctgagcacttaaTCGACAAATCTATCAGTTGGGttgaataatgttttttaaatacaatttttggatttgtacatatttgacccaatgttgcattaagacaacccagcatttttagagtgtatgttaaAGTTCTATTAAGACTTTAAATGGTACAAACAAGTCTTCATTCATGTGTCAGAGCTGACTAACCCTGTTTTTAGATAAAATAATATGATTACATTAAATATCACAcatatcaaaaatgattttaaatcccATGACCCATATTAAACCCATTACACCGATCCCCTCTGATTCATTTCGAAGCGTAAACGTTGTTATTTTCCAAACTGTGGATCAAGAATGACTCATCCAGCACCCTGATACAGCTCTTTTAGCTCTGCTTTTGTTACAGTTCTGTCTGGCAGATTTTGTCCGACTCTGTGCCTTTCTGAGGCTGCTCCTGAGGTAAAATTTTGTTGCACCTCTTGCCATTCCTCCACAGGACCACAAAAAAAGCCAGTATGCagaaacaaaaaatgacaaaaaagatGCAGACAGCGACCATTTCAGAGTAGTAGCTCTTCTGTGAGATGCACAGAGTGTCTTTTCCAGCATCGTGATAAGTGCTGGCTTGTTTTTCCTCGCTcctgtcatttattttttcttcatttatagGTTCAGATTCATCAAGCTCAATTGTGGTGAAGTCAATGTGCTCAGGCTGCTGGTGTGATGGAGACATGCGAGATCGAGGAACCACAGGGAGATTTACAGAAAAGGTGGCGATGGTTTGCTGAAAGCCCAGCTCCTCAGACACGCAGCGGTAGGTGTTTGTGGTCTCTAGAGAGACGGGGAAGACCAGACTGCCATCCGTCCACTGCAGGTACGGGAACTGGGGAACGAGGCTGTTGTTTGAGAATCTCCAGGTCATCTTCGCCAGTTTGGATTTTGACTGACAGGGCAGGACCACAATTTCATTCAAGTGTGCAGTCTTGAACAACACTGGAGAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020199 lncRNA upstream 142547 42897582 ~ 42901740 (+) False XLOC_010198
TCONS_00022017 lncRNA upstream 142547 42897630 ~ 42901740 (+) False XLOC_010198
TCONS_00020201 lncRNA upstream 143607 42898475 ~ 42900680 (+) True XLOC_010198
TCONS_00022016 lncRNA upstream 243556 42795604 ~ 42800731 (+) True XLOC_010195
TCONS_00020195 lncRNA upstream 262840 42776393 ~ 42781447 (+) True XLOC_010194
TCONS_00022024 lncRNA downstream 70771 43119050 ~ 43124236 (+) True XLOC_010201
TCONS_00021749 lncRNA downstream 638874 43687153 ~ 43687568 (+) True XLOC_010208
TCONS_00020211 lncRNA downstream 717700 43765979 ~ 43818565 (+) True XLOC_010209
TCONS_00020220 lncRNA downstream 2154811 45203090 ~ 45206236 (+) True XLOC_010216
TCONS_00020221 lncRNA downstream 2169028 45217307 ~ 45273719 (+) True XLOC_010217
TCONS_00020196 mRNA upstream 200890 42829735 ~ 42843397 (+) False XLOC_010196
TCONS_00020197 mRNA upstream 201317 42830152 ~ 42842970 (+) True XLOC_010196
TCONS_00020191 mRNA upstream 360786 42667560 ~ 42683501 (+) True XLOC_010192
TCONS_00020190 mRNA upstream 548904 42482270 ~ 42495383 (+) True XLOC_010190
TCONS_00020189 mRNA upstream 549942 42481447 ~ 42494345 (+) False XLOC_010190
TCONS_00020202 mRNA downstream 29630 43077909 ~ 43118095 (+) True XLOC_010200
TCONS_00020203 mRNA downstream 91225 43139504 ~ 43150489 (+) True XLOC_010202
TCONS_00020204 mRNA downstream 104448 43152727 ~ 43284939 (+) False XLOC_010203
TCONS_00020205 mRNA downstream 104460 43152739 ~ 43159418 (+) False XLOC_010203
TCONS_00020206 mRNA downstream 171084 43219363 ~ 43243567 (+) True XLOC_010203
TCONS_00020200 other upstream 145777 42898429 ~ 42898510 (+) False XLOC_010198
TCONS_00020198 other upstream 166276 42876446 ~ 42878011 (+) True XLOC_010197
TCONS_00020194 other upstream 262893 42772712 ~ 42781394 (+) False XLOC_010194
TCONS_00020166 other upstream 1495850 41546763 ~ 41548437 (+) True XLOC_010175
TCONS_00020157 other upstream 1990055 41042310 ~ 41054232 (+) False XLOC_010166
TCONS_00020214 other downstream 1557047 44605326 ~ 44605440 (+) True XLOC_010211
TCONS_00020216 other downstream 1634786 44683065 ~ 44687935 (+) True XLOC_010212
TCONS_00020217 other downstream 1656093 44704372 ~ 44705154 (+) True XLOC_010213
TCONS_00020228 other downstream 2539935 45588214 ~ 45588330 (+) True XLOC_010221
TCONS_00020229 other downstream 2618456 45666735 ~ 45666852 (+) True XLOC_010222