RNA id: TCONS_00021749


Basic Information

Item Value
RNA id TCONS_00021749
length 416
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id XLOC_010208
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 43687153 ~ 43687568 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATATTCAGCCACAGTTGCTAAGCAGAATCCATGTCTTATGTGTATTTTCGTCAGACATGTCAGACTTGTTTATAATGCGTCTCTCCACAGCTTGCATCAGCAGTTTTTTCTCCCTCCACATATACTTCCAGTATCAAATCTGTCAGATTTTACACCAGATGCTCGATTAGAAGTTTAATAAATGACCGAGAGGTCTGAACTCCTCCTGCATTTCTCTGCCGCGCAAACATGTGCTGACGAGGAAAAAATGCAGTGATGGAAGATGATGAAGTTCTGTCCCTGTTGCCTCAGATCTGATCCTCCATTGTGCATTTACTGTATGTGTTAATGTGTTTTGTGGTTCACtgatgctgtttttgttttttgtttatttatttatttatttagttatttttaactaAAGCAGGGGTCTCCAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022024 lncRNA upstream 562917 43119050 ~ 43124236 (+) True XLOC_010201
TCONS_00022018 lncRNA upstream 638874 43041505 ~ 43048279 (+) False XLOC_010199
TCONS_00020211 lncRNA downstream 78411 43765979 ~ 43818565 (+) True XLOC_010209
TCONS_00020220 lncRNA downstream 1515522 45203090 ~ 45206236 (+) True XLOC_010216
TCONS_00020221 lncRNA downstream 1529739 45217307 ~ 45273719 (+) True XLOC_010217
TCONS_00022026 lncRNA downstream 1768412 45455980 ~ 45481848 (+) False XLOC_010220
TCONS_00022025 lncRNA downstream 1768412 45455980 ~ 45481848 (+) False XLOC_010220
TCONS_00020210 mRNA upstream 273860 43401005 ~ 43413293 (+) True XLOC_010207
TCONS_00020209 mRNA upstream 294698 43368572 ~ 43392455 (+) True XLOC_010206
TCONS_00020208 mRNA upstream 336648 43347966 ~ 43350505 (+) True XLOC_010205
TCONS_00020207 mRNA upstream 340237 43344475 ~ 43346916 (+) True XLOC_010204
TCONS_00020204 mRNA upstream 402214 43152727 ~ 43284939 (+) False XLOC_010203
TCONS_00020212 mRNA downstream 611334 44298902 ~ 44325675 (+) False XLOC_010210
TCONS_00020213 mRNA downstream 626529 44314097 ~ 44325688 (+) True XLOC_010210
TCONS_00020215 mRNA downstream 990734 44678302 ~ 44687969 (+) False XLOC_010212
TCONS_00020218 mRNA downstream 1080793 44768361 ~ 44780744 (+) True XLOC_010214
TCONS_00020219 mRNA downstream 1218756 44906324 ~ 44917748 (+) True XLOC_010215
TCONS_00020200 other upstream 788643 42898429 ~ 42898510 (+) False XLOC_010198
TCONS_00020198 other upstream 809142 42876446 ~ 42878011 (+) True XLOC_010197
TCONS_00020194 other upstream 905759 42772712 ~ 42781394 (+) False XLOC_010194
TCONS_00020166 other upstream 2138716 41546763 ~ 41548437 (+) True XLOC_010175
TCONS_00020157 other upstream 2632921 41042310 ~ 41054232 (+) False XLOC_010166
TCONS_00020214 other downstream 917758 44605326 ~ 44605440 (+) True XLOC_010211
TCONS_00020216 other downstream 995497 44683065 ~ 44687935 (+) True XLOC_010212
TCONS_00020217 other downstream 1016804 44704372 ~ 44705154 (+) True XLOC_010213
TCONS_00020228 other downstream 1900646 45588214 ~ 45588330 (+) True XLOC_010221
TCONS_00020229 other downstream 1979167 45666735 ~ 45666852 (+) True XLOC_010222