RNA id: TCONS_00020222


Basic Information

Item Value
RNA id TCONS_00020222
length 3476
RNA type mRNA
GC content 0.39
exon number 7
gene id XLOC_010218
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 45337663 ~ 45357518 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCATTTTTACTTCTACCTTTAAAACCAATGAACCTGCTTCATGTGACAACATGAGGGTTTTAAAGTTTCAGTCCGGATGAACTGATATTATTCCTTACAGTTTAGGCTCAGCAGAGTTCCTGCCCCTCGAAGTGTTTCAGGTTTTCGCGGATTTCCATCATGTTTCTTCATGTTCTGCTCCTCCTCCATGCCTCAAGAGGAGCCTTTTCCTCCATCTCATGTTATAATGATCAAGGGAAACCTGTTGACTgGTATTACTTGTACAAACTCCCACACGAGCATCATACACCTCTGGAGGAGGGACTGAAGTATCTTTTCATGGATGTAGAGAGCGAAGGATGGACAGATGGGACGACTTTAGTTAATGATACCCAAAGTGCTGTTGGCAGAACAGTAGGGCCTTTATATGAGGGAGGTGATGTTGGATACATCTTATATAATGACCAGCCACCAAAACAAAAGCAGGTTGAAGGTGCAAGCAGGAGTTGTGGCCACACTAAAGGAGTTGTCGTCTTTGATAAAGAGCAGGGCTTCTGGTTGGTCCACAGCACTCCTCATTTCCCTCCTCCTAAATCTGAGGGCCAGTTTTCTTACCCCACTTCAGGCATAAGTAATGGCCAGAACTTCATCTGTGTCACATATCCGTTCGAGCGCTTTCAGACCATAGGTGAGCAGCTGAAAATCAATCAGCCTCACATCTTCGACTGCAGCATCCCTGGTTCACTGGCCACTGCTGTTCCTGCCATGGCTCAGCTCTGTAAACACACACTGGACAGATGGGACAACACTTCCTCCTCCCCGTCCAATCGCAGCATCTCACTCCTCTCACTGGCTAAAACGGAGTTCATCAGCTTTGCAAAAGGTGCATCGTTTGCAAATGACTTGTATCACTCCTGGGTGGCTCCTACACTTCAGTCTAACCTGCTGGTTCAGTTCTGGCGTCGCTCCACCGGCATCCTGCCCTCGGACTGCTCTCCAAACTGGGAAGTCCTCAACATAGACCTCATTTCCCCAGGGCAGAAGGTCACATTTAAGGCCACAGAGGATCATTCGAAGTGGGCCGTCAGCTCCAGCTCTGGGACGTCTGGCGGCTGGGTCTGCGTTGGAGACATCAACAGGGACGAGGCAGAGGAGAAGAGAGGTGGAGGTACGGTGTGCCGTCGGGATGCTGTGGTGTGGAAGGCCTATCGTTCTGCCGCCCTGCAGTGTGAGAGCTGCAGTGGAGAAGTGCAGACGTGCGAACAAGCCCAGCGCTTTCGCTGAACAAGCTGGACTCAGCAGAAAGAACAACACAATCTCAGCAGTGCAGGTGTAGGTGTCAAACAGGTACGATTATGAGGTCAAACGCTTCTGCTAATATGTGAAGGAGTATACAGGGTAAATCCTTTTAAAGAACGCTCCAATTCAGAAtatcagaatatcttctttagtgtttaacttCTTTAGTGGAGCCTTCTTATAAAGGAATACAGCACAGAACAAATGAAAATCCTTTAAAAACTCTCCACTTTTGTTTTTGgacattttacaactcccctagagttttTGAATCAATTCAGCTGATCTCCGGTTCTGATGGGGTAAAGTATAGATTAGATATGCAGCCGtctggaagtgcgatatgcacattaatatagcagcattttttattgaccctatataatattaattaatatttttacagcactGTGACTGTAGGGTTTAGGGTTAAGGTGGGAGtaggcattaaaaaaatacaattaattggaTAATTTAATAGgtaatatatatttacaagtCTTTATGATTGAATTACACTTCAAAATGTAGTGTCATTaataactatcatgaactaatagtaattactatagtatatgtatatatatactatgGTAATTTCTATTAGTTCatgatatttattaatatatagctCATTAACATATAGCTTTAGCATCATGCTCATAAATGactaaagagttttgataattttattttaagcttCATCCTTCTGTAGTTACAATGTCTACCAAGAAGATTAACAGAAATTAAAAAGTTCCCATTGTGATAATCAAGTTATAATCGAGTAACTTTGCTTCCATATTGTTCCTGCAGCAGGCGCAAATATATTATCTACAGTAGTTTACCTACACTATgaaaaagctgggttccacacaattccttcatgttgtcccaacacagattgttaacttaatagttttaacaaaTGTTGGTTGCACATAAAACAcagaagaattgtgttgtttcaacccatttttaaataagtagtttaaacaagcagcaaaagtcattttttttgagtgtattaccTAGTTACCTAGCTAGGAGACTGCTAGGTGCTGCATAATATATCAAAATGATCAATTCTTTTTTGAAAGCCATTTTGAAGcaggatgctaatggtctaatccgatttaatagATTATGTTATGATTTAatagatttatgctaagctaagctaaaaatcgAGATTggctaaattgattaaaaaatgggATTAACTCACTTGTTTTACTCTAGAGGCACTTCACTTCGCGATCAAGCACCCCTACCCCCACCCTCCCTCTCTTTGTATTTCGCGATCATACCCCCCACACCTCCCGACCCCCGGCTCTACATTGAGCACCTCCCCTTGAAGGGTCTCTGCATGGCACTGTCTATGGGAGTAAATTCATGATTAatgatttcagtttattttatgtCTAATAACTTCAGGTACATTTGATGTTAATACAGCTCTGTTGCGTTTTTAAAAGAGGGTTTACTGAACTGTGCATTTTGTTCAACCTCAGGCTATTTAAGATACActgtaggttttatttttttgtattaaaatcaaTAAGAATATTTTCAGCTGAAAGCGTGGTCCTTGGGGATTTCATAAAATGTGAGTCAAGTCACTTTTGtactccaaaaaaaaataaataaataaaataaaaagaatacagGAAAAACTACAATTATACATGTGACTCCTGACAATTTTATGAAGCATAATTAtcggtctgtgcaagaaactgaagaTTATTAGCTTTAATTATACAAGATGTTCACTCTCCAGAGTATCATGAAGAGGACTGTTTACTGAGTCTGTGGtaataatgttataatttaaTGTTCAGTATCTTACACAGCTAATCATTTTTCTTCATAAGATCTTAATGTATATTCTGGAGGCCTGGGTATTCATTTAGTTCtgcctatatatattttttgttttttttctctcatagtGATGATTATGTTGATTTGATGAATGAATGCATTGATTTAAGTTCAAGATGAATCTTCAAGATGAAGGACTACAGCTTCAGCTAAAAATCTACTTTAATGTTCTTCTGAAGAACTGCtttagaaatgtgtatatatacgGTACACTTTTTTTCTTGCACTGATTAATTTTTTATCAACATGTCAATTGTGGAGTGTAACAAGGTGAAATGTGTAATTGCtgcagcaataaaacaaaaatgcaaaaa

Function

GO:

id name namespace
GO:0006309 apoptotic DNA fragmentation biological_process
GO:0006259 DNA metabolic process biological_process
GO:0004531 deoxyribonuclease II activity molecular_function

KEGG:

id description
ko04142 Lysosome

ZFIN:

id description
ZDB-GENE-010724-16 Predicted to enable deoxyribonuclease II activity. Predicted to be involved in apoptotic DNA fragmentation. Predicted to act upstream of or within DNA metabolic process. Orthologous to human DNASE2 (deoxyribonuclease 2, lysosomal).

Ensembl:

ensembl_id ENSDART00000147343

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020221 lncRNA upstream 63944 45217307 ~ 45273719 (+) True XLOC_010217
TCONS_00020220 lncRNA upstream 131427 45203090 ~ 45206236 (+) True XLOC_010216
TCONS_00020211 lncRNA upstream 1519098 43765979 ~ 43818565 (+) True XLOC_010209
TCONS_00021749 lncRNA upstream 1650095 43687153 ~ 43687568 (+) True XLOC_010208
TCONS_00022024 lncRNA upstream 2213427 43119050 ~ 43124236 (+) True XLOC_010201
TCONS_00022026 lncRNA downstream 98462 45455980 ~ 45481848 (+) False XLOC_010220
TCONS_00022025 lncRNA downstream 98462 45455980 ~ 45481848 (+) False XLOC_010220
TCONS_00022027 lncRNA downstream 429524 45787042 ~ 45812324 (+) False XLOC_010225
TCONS_00022028 lncRNA downstream 439644 45797162 ~ 45812324 (+) True XLOC_010225
TCONS_00022029 lncRNA downstream 630913 45988431 ~ 45990842 (+) True XLOC_010228
TCONS_00020219 mRNA upstream 419915 44906324 ~ 44917748 (+) True XLOC_010215
TCONS_00020218 mRNA upstream 556919 44768361 ~ 44780744 (+) True XLOC_010214
TCONS_00020215 mRNA upstream 649694 44678302 ~ 44687969 (+) False XLOC_010212
TCONS_00020213 mRNA upstream 1011975 44314097 ~ 44325688 (+) True XLOC_010210
TCONS_00020212 mRNA upstream 1011988 44298902 ~ 44325675 (+) False XLOC_010210
TCONS_00020224 mRNA downstream 67389 45424907 ~ 45440643 (+) False XLOC_010219
TCONS_00020225 mRNA downstream 67663 45425181 ~ 45443805 (+) True XLOC_010219
TCONS_00020226 mRNA downstream 98548 45456066 ~ 45689083 (+) False XLOC_010220
TCONS_00020227 mRNA downstream 214438 45571956 ~ 45691220 (+) True XLOC_010220
TCONS_00020230 mRNA downstream 335895 45693413 ~ 45734213 (+) True XLOC_010223
TCONS_00020217 other upstream 632509 44704372 ~ 44705154 (+) True XLOC_010213
TCONS_00020216 other upstream 649728 44683065 ~ 44687935 (+) True XLOC_010212
TCONS_00020214 other upstream 732223 44605326 ~ 44605440 (+) True XLOC_010211
TCONS_00020200 other upstream 2439153 42898429 ~ 42898510 (+) False XLOC_010198
TCONS_00020198 other upstream 2459652 42876446 ~ 42878011 (+) True XLOC_010197
TCONS_00020228 other downstream 230696 45588214 ~ 45588330 (+) True XLOC_010221
TCONS_00020229 other downstream 309217 45666735 ~ 45666852 (+) True XLOC_010222
TCONS_00020265 other downstream 1654823 47012341 ~ 47012457 (+) True XLOC_010251
TCONS_00020272 other downstream 2665775 48023293 ~ 48023408 (+) True XLOC_010259
TCONS_00020273 other downstream 2800791 48158309 ~ 48158423 (+) True XLOC_010260

Expression Profile

//