RNA id: TCONS_00022025


Basic Information

Item Value
RNA id TCONS_00022025
length 725
lncRNA type sense_over
GC content 0.50
exon number 2
gene id XLOC_010220
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 45455980 ~ 45691220 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGACATTCATTGGCTTTTAGATCGATCTACACTGGCAAACGCGTGCgcgcacactctcacacacacacatccacacgcGCGCGCACGCTCCCTTCACCgcccccttctctctctccctctctttttctATCTCTCCCTCCGTTCTCCTCTTCTCCATCACTCTTGTTTTGCGCGTGTGTGATATGTGATGCGATACACGGGCTCTAACCATTCCAATGGCTCTCGTCGACCATGGACGGTGATTTTATTTCCATTTCTCTGTTCGCGTCACGGGAATATCGCTCCAGCGTCGACGCAGTCCACGAGCACACGGGCTTTGCTCGCCTCCTCTGACTGCTGAAGGATATTTTCGCATGTCGAGAGACTGAAGAGACACTGAGAGCACGTTCAATGCCGTTGGAACATGTCATATGTTCCCTTTCAAGGGCCCAAATCACGACCCGTTTTCTCTCAGCGGAGCGACCCACACGCATGAAGACATATAAGGGAATACACAGAGGAGCGCTGCAGAAGCGTCGATTGATGGCTGCGTCATGTATTTATGCAGACGTGGATGGGAAAGATTGTAGCCCCAGACTGTCAGTGATTTATTCAGCATGTGGACTATTGAAAAATGCGGTACAATGCAAATATGCAAACTTCATTGAAGCCCTGCTGCTCCATATACTTGTTTTGACAGTTTATCTGGAGGTAAATGTAAAATAGATGCAGACGGACAGGGGGG

Function

GO:

id name namespace
GO:0050877 nervous system process biological_process
GO:0009581 detection of external stimulus biological_process
GO:0009582 detection of abiotic stimulus biological_process
GO:0009583 detection of light stimulus biological_process
GO:0009314 response to radiation biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0009416 response to light stimulus biological_process
GO:0003008 system process biological_process
GO:0051606 detection of stimulus biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0071482 cellular response to light stimulus biological_process
GO:0031226 intrinsic component of plasma membrane cellular_component
GO:0042995 cell projection cellular_component
GO:0001750 photoreceptor outer segment cellular_component
GO:0043005 neuron projection cellular_component
GO:0044459 obsolete plasma membrane part cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0097730 non-motile cilium cellular_component
GO:0097731 9+0 non-motile cilium cellular_component
GO:0097733 photoreceptor cell cilium cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0008020 G protein-coupled photoreceptor activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020221 lncRNA upstream 182261 45217307 ~ 45273719 (+) True XLOC_010217
TCONS_00020220 lncRNA upstream 249744 45203090 ~ 45206236 (+) True XLOC_010216
TCONS_00020211 lncRNA upstream 1637415 43765979 ~ 43818565 (+) True XLOC_010209
TCONS_00021749 lncRNA upstream 1768412 43687153 ~ 43687568 (+) True XLOC_010208
TCONS_00022024 lncRNA upstream 2331744 43119050 ~ 43124236 (+) True XLOC_010201
TCONS_00022027 lncRNA downstream 305194 45787042 ~ 45812324 (+) False XLOC_010225
TCONS_00022028 lncRNA downstream 315314 45797162 ~ 45812324 (+) True XLOC_010225
TCONS_00022029 lncRNA downstream 506583 45988431 ~ 45990842 (+) True XLOC_010228
TCONS_00022030 lncRNA downstream 603542 46085390 ~ 46104010 (+) True XLOC_010229
TCONS_00022031 lncRNA downstream 787876 46269724 ~ 46270888 (+) True XLOC_010232
TCONS_00020225 mRNA upstream 12175 45425181 ~ 45443805 (+) True XLOC_010219
TCONS_00020224 mRNA upstream 15337 45424907 ~ 45440643 (+) False XLOC_010219
TCONS_00020222 mRNA upstream 98462 45337663 ~ 45357518 (+) False XLOC_010218
TCONS_00020223 mRNA upstream 99070 45337720 ~ 45356910 (+) True XLOC_010218
TCONS_00020219 mRNA upstream 538232 44906324 ~ 44917748 (+) True XLOC_010215
TCONS_00020227 mRNA downstream 90108 45571956 ~ 45691220 (+) True XLOC_010220
TCONS_00020230 mRNA downstream 211565 45693413 ~ 45734213 (+) True XLOC_010223
TCONS_00020231 mRNA downstream 257345 45739193 ~ 45778664 (+) False XLOC_010224
TCONS_00020232 mRNA downstream 257429 45739277 ~ 45782607 (+) False XLOC_010224
TCONS_00020233 mRNA downstream 257571 45739419 ~ 45782559 (+) False XLOC_010224
TCONS_00020217 other upstream 750826 44704372 ~ 44705154 (+) True XLOC_010213
TCONS_00020216 other upstream 768045 44683065 ~ 44687935 (+) True XLOC_010212
TCONS_00020214 other upstream 850540 44605326 ~ 44605440 (+) True XLOC_010211
TCONS_00020200 other upstream 2557470 42898429 ~ 42898510 (+) False XLOC_010198
TCONS_00020198 other upstream 2577969 42876446 ~ 42878011 (+) True XLOC_010197
TCONS_00020228 other downstream 106366 45588214 ~ 45588330 (+) True XLOC_010221
TCONS_00020229 other downstream 184887 45666735 ~ 45666852 (+) True XLOC_010222
TCONS_00020265 other downstream 1530493 47012341 ~ 47012457 (+) True XLOC_010251
TCONS_00020272 other downstream 2541445 48023293 ~ 48023408 (+) True XLOC_010259
TCONS_00020273 other downstream 2676461 48158309 ~ 48158423 (+) True XLOC_010260

Expression Profile

//