RNA id: TCONS_00022027


Basic Information

Item Value
RNA id TCONS_00022027
length 970
lncRNA type antisense_over
GC content 0.48
exon number 7
gene id XLOC_010225
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 45787042 ~ 45812324 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCGAGCTTTGATTCCTCTGCCGCGTGTCCCTGCTATGAACTGAACCTGCCACCTGGACTAATCAAGAGAGGAAAGTTGACACTTTTACTAATGTTTGAAGAAATCTCTTCATCCTGCGTTAAATATCTGCATATGTTGAATGGAGAACATTTCTTCTTTTGTTTCTCATTGAAAATGTCATCTTTATACAGCGTATCAGTTTGGAAGggagtaaaagCCTGCTTTCAGAAGTGTGTCATTTTTTATGGGCTGATCAACTGCTACTCCAGGATGTCCAGCAGCCCTGCATCAGGAGGTGCACTTCTTTTGGGCAGGTGCGAGGCCGCTCCAGCTCTCGGCCCTGCGTGATGCACTCAATGGCCTGGGGATAGGGTGAAGATTTCCCACAAAACGACTCCGAAGCTCCAGATGTCACTCTCTGTGGTGAACTTCCTGTACATAATGCTTTCCGGTGGCATCCAGCGAATGGGCAGCATCGTCCTGCCTCCGACCTGAGGATGTAAATGTGGACAAATCACTACCAAACATCTCTGCAGAGgACAGTTCCTTGTGGCCAGGTCTCTGTGGACAAAATGAAGGGACGCCAGGTACACCATTCCTGAGGCGATCTGAGCGGCAATGTGGAGCATCTGAGGAAGAGTCAACTGACCCATCGGAGGAACCTTCATCTCATCTAATATACGAGCATCGGGACCGTGAGCCCTGTACAAAAACAACACGCATTACAAAATATTGCGGGTTCTCCACAAAACTGGACAAGCCAGAATCCAGTGTGCCGTCATCTGAAGATGGAGGACTAGCACCGAAGTTCATGAAGCGGAGAGACACTGCCAGATCATCCTCGGTGCCCAGAACTGATGAACCTGTGGACAGAATGCACAGAAAATAAGTGGTTCCGAAAAAGCTCTGGTatggtatattttatttttccctaCCACATCTGTAAAAGTTGTGTTCACAATTGGCAGAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022026 lncRNA upstream 305194 45455980 ~ 45481848 (+) False XLOC_010220
TCONS_00022025 lncRNA upstream 305194 45455980 ~ 45481848 (+) False XLOC_010220
TCONS_00020221 lncRNA upstream 513323 45217307 ~ 45273719 (+) True XLOC_010217
TCONS_00020220 lncRNA upstream 580806 45203090 ~ 45206236 (+) True XLOC_010216
TCONS_00020211 lncRNA upstream 1968477 43765979 ~ 43818565 (+) True XLOC_010209
TCONS_00022029 lncRNA downstream 176107 45988431 ~ 45990842 (+) True XLOC_010228
TCONS_00022030 lncRNA downstream 273066 46085390 ~ 46104010 (+) True XLOC_010229
TCONS_00022031 lncRNA downstream 457400 46269724 ~ 46270888 (+) True XLOC_010232
TCONS_00021750 lncRNA downstream 464620 46276944 ~ 46282156 (+) True XLOC_010233
TCONS_00022032 lncRNA downstream 743070 46555394 ~ 46569152 (+) True XLOC_010240
TCONS_00020232 mRNA upstream 4435 45739277 ~ 45782607 (+) False XLOC_010224
TCONS_00020233 mRNA upstream 4483 45739419 ~ 45782559 (+) False XLOC_010224
TCONS_00020231 mRNA upstream 8378 45739193 ~ 45778664 (+) False XLOC_010224
TCONS_00020234 mRNA upstream 8378 45746549 ~ 45778664 (+) True XLOC_010224
TCONS_00020230 mRNA upstream 52829 45693413 ~ 45734213 (+) True XLOC_010223
TCONS_00020235 mRNA downstream 109851 45922175 ~ 45930077 (+) True XLOC_010226
TCONS_00020236 mRNA downstream 118638 45930962 ~ 45980841 (+) False XLOC_010227
TCONS_00020237 mRNA downstream 118717 45931041 ~ 45982657 (+) True XLOC_010227
TCONS_00020238 mRNA downstream 188632 46000956 ~ 46091600 (+) False XLOC_010229
TCONS_00020239 mRNA downstream 188657 46000981 ~ 46082219 (+) False XLOC_010229
TCONS_00020229 other upstream 120190 45666735 ~ 45666852 (+) True XLOC_010222
TCONS_00020228 other upstream 198712 45588214 ~ 45588330 (+) True XLOC_010221
TCONS_00020217 other upstream 1081888 44704372 ~ 44705154 (+) True XLOC_010213
TCONS_00020216 other upstream 1099107 44683065 ~ 44687935 (+) True XLOC_010212
TCONS_00020214 other upstream 1181602 44605326 ~ 44605440 (+) True XLOC_010211
TCONS_00020265 other downstream 1200017 47012341 ~ 47012457 (+) True XLOC_010251
TCONS_00020272 other downstream 2210969 48023293 ~ 48023408 (+) True XLOC_010259
TCONS_00020273 other downstream 2345985 48158309 ~ 48158423 (+) True XLOC_010260
TCONS_00020274 other downstream 2444689 48257013 ~ 48257130 (+) True XLOC_010261
TCONS_00020297 other downstream 3735447 49547771 ~ 49547886 (+) True XLOC_010272

Expression Profile

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