RNA id: TU545336



Basic Information


Item Value
RNA id TU545336
length 2598
lncRNA type read_through
GC content 0.41
exon number 1
gene id G475253
representative True

Chromosome Information


Item Value
chromosome id CI01000330
NCBI id null
chromosome length 4651236
location 3499680 ~ 3502277 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GGTGTTGCCTAATATAGTCAGGTCTATTGTAAATTGCTGAGCTTTACTAGATTTACAGTACTGCTGTGACAGTAATGTAGGCAATGACGATAGGCATTTTTCCTTCTGTTTGTGTGCCGTCTGTGTGTCTAGGTTTGATTTTTGCCCCAAGTGTGCTTGTGTTAAATTTATGGTTCAGTCAAGCGCAAAATGCACCGTCAAATCTACAGTGGCACTGTGCTTGAGATTTAATTCAAGCTAAATTGTTTTCTCTAGTGTATTGTGTTGATGTGCAACTTCTCTTTTAATGATGTCTATTGTAATAACCTTTGTCTAGACCAGAGCACAGTATGCTTTGACCTGTGTTTCAACTGCTTGGTCCCTTTTGGCTCGTTGATGATGCTTTCGACTCATTCCAGACTCACTTGAATGTCCCAAGGGTTCTGGTTTTCTGCTGTGATAAGGGTTTTGTGCTGGTCTACTTTCTGCTCTGATTGGCAACAGGGAGGGCCTGCCACGGTGGGCGGCGGGGCAGATTTAGGGCCCAGTGTGATGGCTTTATGACCAGGCTCTCCCCAGGAGACCTTTGTGCCCATTGAGTGGAACTCATTGAGGAATGGAGGGCTGCAGTCACTGGCACACAAGTGCAGTTTGTCCTGAGGAGACGGGCCAAAGAGAAAGAAAGAGTGAGAGACATATCGACAAATAACAAGGCAAGGCCGAGGGGAGAGAAATATTCCCTTTATAGAAAAGAACAGGACAGAGAATAGAGCCAGAAAAAGAAAAAGTGCACCCTTTTGAGAAACGATGTTCAAAGAAGAACAAGAGAACCTGAAGGTGGAGAAGAATGCACTATATGGCTGTTTTTCAATCCTACAGCATCATTGACAGTTTATATGTTATAAAATCATTGTACATTTTTACGATGGCAGACTTGACGACCACTATCGGGTTGGTTAAATAAGTAAATGCACGATGAAGAATAATCCATGGAACAGGTTTTAATGACAGATACTCAGGAGGAATGCAGAGAATATTAACCAAACTACTTCAAACAAAGATGAACAGAGAATGGATGAGAACTCAGGGTTTAAATACATGGAGAAAACAAAGGTAACTAATGAGTTAATTAATGAGACAACAGGTGAACAGAATGATAAATCAAAGAACTGACTAACGCATACCAAAACTACAGGTCACAGGGAGCCACTAGAATAGTTCCCTGAAAACAAATTTCTCCCCCGGGCCATGTTCCTGGTTAAATTTGCACCGGGAATAGGAACTCTGAAGCGGCCTTAAGCGCGGCATTTACAAACGCTAAAAACTGAATGGAGGATGCCATGATCGGAGCTGTGTTTGTTGTGTGTCGTGAGTTTCGTGATAACGAAGATGGAATTTAAACGCATAATAATGCGACTGAAAGAGCAAAAAGTGGGGCTAAGAGACAATCTCCAATGACAACTTTCAGTATTACATATCATCGAGGTGGAGAAAAGAACACAACCCCGCAGACAACAGGTAAATGCCGTTATCGCTGTTTTCCATGTTCGTGAAGTAAATATGTTTACACGGCTTTTTAAAAATGCTGGTGTTTGACATGCGTTCGGCCAATCAACATACACTCATGTCACTGATAGTTCCTAAAGTTCTGGTTTAGACCCTGCTCTGAAGTAGGAGCTAATTTAGTTCCGCCAAAAGGAGTTCCTAGAACTAAAATCGTTCCTAGTTCCTGCGGTGCAAACACGGCAAAATCCGGGTACTTCAGCCAATAGTTCTAGGAACTATGAAAAGAACTTATGATGCAACCACTACTTAATTTCCATAGATTAAGCAGGTTGCTGAGTGTTTTGTCTTATCCAGCATTTATTCTCCATAAATCATGTCATACATTAGAGTGAATGCACTGAACCAGCTATTTTAGATGTTGCATAAGCAATCCTACTATCTCTCTGCTAATGTGCATTTAAACCCTTCTCTGAGGACTATCTGTTAATAGATAGCTGTTAAATGCTTATAGCAAGCATGTTCCTCAGAAAAAGATCTAGGATCAGCACCTTCCTGCCCCAATCTATCCTTAGCAATCGCAAAAAACCCACAAGACTGTTCTCAGATCAGTACTAACTGCTCTACTGTGAGGCACTGCTGTAAAAACAGTGAGGCTGAGGCTTGTTATTCAGAATTAGCAATTTGTTAATGCTCTTTTAATGGCCCCACCGCTGACATTTCACTCCAACGAAAACAATCCTGCCTCTAAGTAGCCGTAGTTATGAATGAAAAGGTTATGAAGTGCCTTCAGTCCTCCCCCTAGATCCCAAATAAATGGCTCCACTGCAGTCAAGCAAAACATACTTTGTACCCGAAAAAGCTTGGGGAAAAAAACCTCTATCCACATGTTTATGGCTTATTAGGCCTGGAAATAAAATTGTGATTTTCTCCCACTGTGTGGTTATGTAATCCATTGTATCATACAGAGTTTTTAAACGTAATGCTGAGCCAGTTCCCAGAAAGCAAACGGCAGGAATGTCCTCAACATCCCTCGAAAGGGTCGAACGTCTGGAACTTTTCACCCTCATCTCCTCCACACATACGTGCGGGAAGAAGTGGAACTATTGAACGGGAGCATGTAATGAGACATAAACTGGACTACTTAGCTAAAGGCTGGCCGCAAGTGCAGACCCTGCCAGCTGTCAGCATCCCAGCCATCACGCACACTCTCAAGTGCTCACGAAGCACTGCATGGACCATGATATTTATGTAACATGCACTCAATAACCTCTGTATATGTCTGCAATGCCTTGTTTGTGCCACCATGTTGCTATATTACTAGTAGGCGTTTTCGTTATTTGTGGCCTGTGGAATGGTTCATAGCTTCTGAAAGTCTGATCACAAATGATTTGGAAACACCCACAACATACCAATAGTCTCAATAGTCATCGCTCATGCCACTTTGTGCCAGTCGTTTGGTCACTTCAAGTCACTGAGTGTGATTGGCCCTTTATTGGTCTAGAGATGCAGGTGTATGTGCTGCTGCAGGTGTATGTGTGTTTAAAGCTGACTGCAGTGCATCCCAGCAAACACAGAACGTTCCCTTAATGTTGCCATTTGGTTATTTTTTGGGAACCAAATAAGAATGTTCTGGGAACATTCTTTGTAGGTTCTTTTATAACCTTTATAAATGAACCTTCCCAGAACATTTTTTTTTTATCCTAAAGAGAACTTATACAGAATGTTCTCTAATAGTTATTTTTGGGTTTTATTTGGTAACACTTTAGTTTAGGTTCCAATTCTCACTATTAACTAGTTGCTTATTAGCATGCATATTACTAGGATATTGGTTTTTTATTAGTACTTAATAAGCGGTAATTAGAAGTTTGAGGCAAAAGTCGTAGTTAAAGGATTATTTCGCTTTAATGAAAATTACCCCAAGATTTACTCACCTCAAGCCATCCTAGTTCTATATGGCTTTTTTCTTTCTGATGAACACAATCTGAGTTCTATTAATAAACATCCTGATGCATCCGAGCTTTGTAATGGCAGTGAACAGGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU545466 lncRNA upstream 52936 3444918 ~ 3445353 (+) True G475374
TU545300 lncRNA upstream 75952 3394037 ~ 3422337 (+) True G475217
TU545331 lncRNA upstream 134105 3339892 ~ 3364184 (+) True G475248
TU545455 lncRNA upstream 147100 3350279 ~ 3351189 (+) True G475364
TU545398 lncRNA upstream 243270 3254534 ~ 3255019 (+) True G475312
TU545313 lncRNA downstream 36264 3538541 ~ 3545531 (+) True G475230
TU545495 lncRNA downstream 104716 3606993 ~ 3607198 (+) True G475402
TU545497 lncRNA downstream 110961 3613238 ~ 3613456 (+) True G475404
TU545279 lncRNA downstream 146573 3648850 ~ 3651319 (+) False G475197
TU545280 lncRNA downstream 147503 3649780 ~ 3651319 (+) True G475197
CI01000330_03316303_03332582.mRNA mRNA upstream 165707 3315549 ~ 3332582 (+) True CI01000330_03316303_03332582
CI01000330_03273418_03280036.mRNA mRNA upstream 218068 3273322 ~ 3280221 (+) True CI01000330_03273418_03280036
CI01000330_03172826_03180813.mRNA mRNA upstream 317343 3172826 ~ 3180946 (+) True CI01000330_03172826_03180813
CI01000330_03149640_03168640.mRNA mRNA upstream 329465 3149640 ~ 3168824 (+) True CI01000330_03149640_03168640
CI01000330_03111967_03139685.mRNA mRNA upstream 358545 3111236 ~ 3139744 (+) True CI01000330_03111967_03139685
CI01000330_03505183_03536773.mRNA mRNA downstream 1028 3503305 ~ 3537059 (+) True CI01000330_03505183_03536773
CI01000330_03620261_03633818.mRNA mRNA downstream 117984 3620261 ~ 3635348 (+) True CI01000330_03620261_03633818
CI01000330_03670667_03672729.mRNA mRNA downstream 168190 3670467 ~ 3673129 (+) True CI01000330_03670667_03672729
CI01000330_03692275_03699509.mRNA mRNA downstream 189708 3691985 ~ 3699529 (+) True CI01000330_03692275_03699509
CI01000330_03723197_03728117.mRNA mRNA downstream 220852 3723129 ~ 3728211 (+) False CI01000330_03723197_03728117
TU545318 other upstream 407056 3072547 ~ 3091233 (+) True G475235
TU544868 other upstream 821847 2675912 ~ 2676442 (+) True G474819
TU544867 other upstream 821871 2675912 ~ 2676418 (+) False G474819
TU544855 other upstream 900184 2595046 ~ 2598105 (+) True G474807
TU545319 other downstream 83198 3585475 ~ 3590497 (+) True G475236
TU545514 other downstream 214267 3716544 ~ 3717419 (+) True G475421
TU545589 other downstream 490749 3993026 ~ 3993938 (+) True G475483

Expression Profile