RNA id: TU545376


Basic Information

Item Value
RNA id TU545376
length 239
lncRNA type intronic
GC content 0.33
exon number 1
gene id G475290
representative True

Chromosome Information

Item Value
chromosome id CI01000330
NCBI id null
chromosome length 4651236
location 3188838 ~ 3189076 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGTTTTTATTTGAGTGTAATTATTATATCTGAAAATAAACAGCAGCTGAATATAATACCTCTGCTGTTAATTGTAACCTCTAAAATTGTAGTGTACCAAATGAGAGGGTTCCCTGTATAGTTTGCAACATTATTTGGGAGAGATTTTTTTTTTTTCCTTAAGAAAAACCAAACTATCGGTATGGGCCGATATCATTCTGAATAATCGGCTATCGGTATCGGCAGAGAAACTTAGTATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU545375 lncRNA upstream 172 3188270 ~ 3188666 (+) True G475289
TU545334 lncRNA upstream 206597 2977639 ~ 2982241 (+) True G475251
TU545340 lncRNA upstream 212341 2974570 ~ 2976497 (+) True G475257
TU545312 lncRNA upstream 358554 2819775 ~ 2830284 (+) True G475229
TU545226 lncRNA upstream 486369 2702262 ~ 2702469 (+) True G475148
TU545377 lncRNA downstream 2635 3191711 ~ 3192143 (+) True G475291
TU545397 lncRNA downstream 60566 3249642 ~ 3253922 (+) True G475311
TU545398 lncRNA downstream 65458 3254534 ~ 3255019 (+) True G475312
TU545331 lncRNA downstream 150816 3339892 ~ 3364184 (+) True G475248
TU545455 lncRNA downstream 161203 3350279 ~ 3351189 (+) True G475364
CI01000330_03172826_03180813.mRNA mRNA upstream 7892 3172826 ~ 3180946 (+) True CI01000330_03172826_03180813
CI01000330_03149640_03168640.mRNA mRNA upstream 20014 3149640 ~ 3168824 (+) True CI01000330_03149640_03168640
CI01000330_03111967_03139685.mRNA mRNA upstream 49094 3111236 ~ 3139744 (+) True CI01000330_03111967_03139685
CI01000330_03068141_03070654.mRNA mRNA upstream 117713 3067822 ~ 3071125 (+) True CI01000330_03068141_03070654
CI01000330_02924840_02955205.mRNA mRNA upstream 233556 2923013 ~ 2955282 (+) True CI01000330_02924840_02955205
CI01000330_03273418_03280036.mRNA mRNA downstream 84246 3273322 ~ 3280221 (+) True CI01000330_03273418_03280036
CI01000330_03316303_03332582.mRNA mRNA downstream 126473 3315549 ~ 3332582 (+) True CI01000330_03316303_03332582
CI01000330_03495676_03498512.mRNA mRNA downstream 305830 3494906 ~ 3498514 (+) False CI01000330_03495676_03498512
CI01000330_03505183_03536773.mRNA mRNA downstream 314229 3503305 ~ 3537059 (+) True CI01000330_03505183_03536773
CI01000330_03620261_03633818.mRNA mRNA downstream 431185 3620261 ~ 3635348 (+) True CI01000330_03620261_03633818
TU545318 other upstream 97605 3072547 ~ 3091233 (+) True G475235
TU544868 other upstream 512396 2675912 ~ 2676442 (+) True G474819
TU544867 other upstream 512420 2675912 ~ 2676418 (+) False G474819
TU544855 other upstream 590733 2595046 ~ 2598105 (+) True G474807
TU545319 other downstream 396399 3585475 ~ 3590497 (+) True G475236
TU545514 other downstream 527468 3716544 ~ 3717419 (+) True G475421
TU545589 other downstream 803950 3993026 ~ 3993938 (+) True G475483

Expression Profile