RNA id: TU545455


Basic Information

Item Value
RNA id TU545455
length 503
lncRNA type inter_gene
GC content 0.32
exon number 2
gene id G475364
representative True

Chromosome Information

Item Value
chromosome id CI01000330
NCBI id null
chromosome length 4651236
location 3350279 ~ 3351189 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTATAATTATGACCTTTACCTTTTTAAATAATTTGCTCACACTTTGAATATCAGGTAGGCTATTGTTTAATTTAATTCAATAGCACTTTTCACAATTTTGCATGGTTGCAAACAGATATACATACATATAGAAAGTAGTTACATAAGTAAATATTTGTAATTATGACAAATAAAGAAAACAACATATAGTCAGTTTGAATTGGTGAAAGAAATTCACGTACCTGATCAGAAGTGAAACACAAGCAGTTCTGCATGTTCACATTTTTCCACCAATGAACGGAACTGTCTGTGTTTTAGTGCGTGCACAAGAATAAAACTTATGTGCCGGTTTATGCAATTGCTTCATGTTGCGTTAATGACAGATAATGTCAGGTAAAGTGGAAGCAAAACATTCTTGATATTTAATGTTACATCTAATGGTTTTATTTCTTAAACAGTTTAAAGTTTAATGCACGTTCGTGTTGTATAGCAACAGGCCGTTTCACATTTATTTTCACGCACC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU545398 lncRNA upstream 95260 3254534 ~ 3255019 (+) True G475312
TU545397 lncRNA upstream 96357 3249642 ~ 3253922 (+) True G475311
TU545377 lncRNA upstream 158136 3191711 ~ 3192143 (+) True G475291
TU545376 lncRNA upstream 161203 3188838 ~ 3189076 (+) True G475290
TU545375 lncRNA upstream 161613 3188270 ~ 3188666 (+) True G475289
TU545300 lncRNA downstream 42848 3394037 ~ 3422337 (+) True G475217
TU545466 lncRNA downstream 93729 3444918 ~ 3445353 (+) True G475374
TU545336 lncRNA downstream 147100 3499680 ~ 3502277 (+) True G475253
TU545313 lncRNA downstream 187352 3538541 ~ 3545531 (+) True G475230
TU545495 lncRNA downstream 255804 3606993 ~ 3607198 (+) True G475402
CI01000330_03316303_03332582.mRNA mRNA upstream 17697 3315549 ~ 3332582 (+) True CI01000330_03316303_03332582
CI01000330_03273418_03280036.mRNA mRNA upstream 70058 3273322 ~ 3280221 (+) True CI01000330_03273418_03280036
CI01000330_03172826_03180813.mRNA mRNA upstream 169333 3172826 ~ 3180946 (+) True CI01000330_03172826_03180813
CI01000330_03149640_03168640.mRNA mRNA upstream 181455 3149640 ~ 3168824 (+) True CI01000330_03149640_03168640
CI01000330_03111967_03139685.mRNA mRNA upstream 210535 3111236 ~ 3139744 (+) True CI01000330_03111967_03139685
CI01000330_03495676_03498512.mRNA mRNA downstream 143717 3494906 ~ 3498514 (+) False CI01000330_03495676_03498512
CI01000330_03505183_03536773.mRNA mRNA downstream 152116 3503305 ~ 3537059 (+) True CI01000330_03505183_03536773
CI01000330_03620261_03633818.mRNA mRNA downstream 269072 3620261 ~ 3635348 (+) True CI01000330_03620261_03633818
CI01000330_03670667_03672729.mRNA mRNA downstream 319278 3670467 ~ 3673129 (+) True CI01000330_03670667_03672729
CI01000330_03692275_03699509.mRNA mRNA downstream 340796 3691985 ~ 3699529 (+) True CI01000330_03692275_03699509
TU545318 other upstream 259046 3072547 ~ 3091233 (+) True G475235
TU544868 other upstream 673837 2675912 ~ 2676442 (+) True G474819
TU544867 other upstream 673861 2675912 ~ 2676418 (+) False G474819
TU544855 other upstream 752174 2595046 ~ 2598105 (+) True G474807
TU545319 other downstream 234286 3585475 ~ 3590497 (+) True G475236
TU545514 other downstream 365355 3716544 ~ 3717419 (+) True G475421
TU545589 other downstream 641837 3993026 ~ 3993938 (+) True G475483

Expression Profile