Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU545300 |
| length | 4989 |
| lncRNA type | antisense_over |
| GC content | 0.42 |
| exon number | 4 |
| gene id | G475217 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000330 |
| NCBI id | null |
| chromosome length | 4651236 |
| location | 3394037 ~ 3422337 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU545331 | lncRNA | upstream | 29853 | 3339892 ~ 3364184 (+) | True | G475248 |
| TU545455 | lncRNA | upstream | 42848 | 3350279 ~ 3351189 (+) | True | G475364 |
| TU545398 | lncRNA | upstream | 139018 | 3254534 ~ 3255019 (+) | True | G475312 |
| TU545397 | lncRNA | upstream | 140115 | 3249642 ~ 3253922 (+) | True | G475311 |
| TU545377 | lncRNA | upstream | 201894 | 3191711 ~ 3192143 (+) | True | G475291 |
| TU545466 | lncRNA | downstream | 22581 | 3444918 ~ 3445353 (+) | True | G475374 |
| TU545336 | lncRNA | downstream | 75952 | 3499680 ~ 3502277 (+) | True | G475253 |
| TU545313 | lncRNA | downstream | 116204 | 3538541 ~ 3545531 (+) | True | G475230 |
| TU545495 | lncRNA | downstream | 184656 | 3606993 ~ 3607198 (+) | True | G475402 |
| TU545497 | lncRNA | downstream | 190901 | 3613238 ~ 3613456 (+) | True | G475404 |
| CI01000330_03316303_03332582.mRNA | mRNA | upstream | 61455 | 3315549 ~ 3332582 (+) | True | CI01000330_03316303_03332582 |
| CI01000330_03273418_03280036.mRNA | mRNA | upstream | 113816 | 3273322 ~ 3280221 (+) | True | CI01000330_03273418_03280036 |
| CI01000330_03172826_03180813.mRNA | mRNA | upstream | 213091 | 3172826 ~ 3180946 (+) | True | CI01000330_03172826_03180813 |
| CI01000330_03149640_03168640.mRNA | mRNA | upstream | 225213 | 3149640 ~ 3168824 (+) | True | CI01000330_03149640_03168640 |
| CI01000330_03111967_03139685.mRNA | mRNA | upstream | 254293 | 3111236 ~ 3139744 (+) | True | CI01000330_03111967_03139685 |
| CI01000330_03495676_03498512.mRNA | mRNA | downstream | 72569 | 3494906 ~ 3498514 (+) | False | CI01000330_03495676_03498512 |
| CI01000330_03505183_03536773.mRNA | mRNA | downstream | 80968 | 3503305 ~ 3537059 (+) | True | CI01000330_03505183_03536773 |
| CI01000330_03620261_03633818.mRNA | mRNA | downstream | 197924 | 3620261 ~ 3635348 (+) | True | CI01000330_03620261_03633818 |
| CI01000330_03670667_03672729.mRNA | mRNA | downstream | 248130 | 3670467 ~ 3673129 (+) | True | CI01000330_03670667_03672729 |
| CI01000330_03692275_03699509.mRNA | mRNA | downstream | 269648 | 3691985 ~ 3699529 (+) | True | CI01000330_03692275_03699509 |
| TU545318 | other | upstream | 302804 | 3072547 ~ 3091233 (+) | True | G475235 |
| TU544868 | other | upstream | 717595 | 2675912 ~ 2676442 (+) | True | G474819 |
| TU544867 | other | upstream | 717619 | 2675912 ~ 2676418 (+) | False | G474819 |
| TU544855 | other | upstream | 795932 | 2595046 ~ 2598105 (+) | True | G474807 |
| TU545319 | other | downstream | 163138 | 3585475 ~ 3590497 (+) | True | G475236 |
| TU545514 | other | downstream | 294207 | 3716544 ~ 3717419 (+) | True | G475421 |
| TU545589 | other | downstream | 570689 | 3993026 ~ 3993938 (+) | True | G475483 |
