Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU545320 |
| length | 2842 |
| lncRNA type | inter_gene |
| GC content | 0.39 |
| exon number | 1 |
| gene id | G475237 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000330 |
| NCBI id | null |
| chromosome length | 4651236 |
| location | 3685096 ~ 3687937 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU545508 | lncRNA | upstream | 3188 | 3681658 ~ 3681908 (+) | True | G475415 |
| TU545295 | lncRNA | upstream | 27611 | 3654302 ~ 3657485 (+) | True | G475212 |
| TU545279 | lncRNA | upstream | 33777 | 3648850 ~ 3651319 (+) | False | G475197 |
| TU545280 | lncRNA | upstream | 33777 | 3649780 ~ 3651319 (+) | True | G475197 |
| TU545497 | lncRNA | upstream | 71640 | 3613238 ~ 3613456 (+) | True | G475404 |
| TU545315 | lncRNA | downstream | 15387 | 3703324 ~ 3704295 (+) | True | G475232 |
| TU545525 | lncRNA | downstream | 35006 | 3722943 ~ 3728089 (+) | True | CI01000330_03723197_03728117 |
| TU545316 | lncRNA | downstream | 57074 | 3745011 ~ 3754518 (+) | True | G475233 |
| TU545566 | lncRNA | downstream | 120844 | 3808781 ~ 3808995 (+) | True | G475462 |
| TU545567 | lncRNA | downstream | 146361 | 3834298 ~ 3834518 (+) | True | CI01000330_03814548_03834503 |
| CI01000330_03670667_03672729.mRNA | mRNA | upstream | 11967 | 3670467 ~ 3673129 (+) | True | CI01000330_03670667_03672729 |
| CI01000330_03620261_03633818.mRNA | mRNA | upstream | 49748 | 3620261 ~ 3635348 (+) | True | CI01000330_03620261_03633818 |
| CI01000330_03505183_03536773.mRNA | mRNA | upstream | 148037 | 3503305 ~ 3537059 (+) | True | CI01000330_03505183_03536773 |
| CI01000330_03495676_03498512.mRNA | mRNA | upstream | 186582 | 3494906 ~ 3498514 (+) | False | CI01000330_03495676_03498512 |
| CI01000330_03316303_03332582.mRNA | mRNA | upstream | 352514 | 3315549 ~ 3332582 (+) | True | CI01000330_03316303_03332582 |
| CI01000330_03692275_03699509.mRNA | mRNA | downstream | 4048 | 3691985 ~ 3699529 (+) | True | CI01000330_03692275_03699509 |
| CI01000330_03723197_03728117.mRNA | mRNA | downstream | 35192 | 3723129 ~ 3728211 (+) | False | CI01000330_03723197_03728117 |
| CI01000330_03771375_03773835.mRNA | mRNA | downstream | 82449 | 3770386 ~ 3773940 (+) | True | CI01000330_03771375_03773835 |
| CI01000330_03779829_03785869.mRNA | mRNA | downstream | 91892 | 3779829 ~ 3786867 (+) | True | CI01000330_03779829_03785869 |
| CI01000330_03814548_03834503.mRNA | mRNA | downstream | 126358 | 3814295 ~ 3834607 (+) | False | CI01000330_03814548_03834503 |
| TU545319 | other | upstream | 94599 | 3585475 ~ 3590497 (+) | True | G475236 |
| TU545318 | other | upstream | 593863 | 3072547 ~ 3091233 (+) | True | G475235 |
| TU544868 | other | upstream | 1008654 | 2675912 ~ 2676442 (+) | True | G474819 |
| TU544867 | other | upstream | 1008678 | 2675912 ~ 2676418 (+) | False | G474819 |
| TU544854 | other | upstream | 1087949 | 2596384 ~ 2596481 (+) | True | G474806 |
| TU545514 | other | downstream | 28607 | 3716544 ~ 3717419 (+) | True | G475421 |
| TU545589 | other | downstream | 305089 | 3993026 ~ 3993938 (+) | True | G475483 |
