RNA id: TU545566


Basic Information

Item Value
RNA id TU545566
length 215
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G475462
representative True

Chromosome Information

Item Value
chromosome id CI01000330
NCBI id null
chromosome length 4651236
location 3808781 ~ 3808995 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCTTGATGACGCCTTGATTTCGCGGAATCATGGGAGGTGTTGTCTTCACGTCTACAGGAAAGAATCCGACGGGACTCGGCAGAAATCATATTCATGGATGAGCTAATGTATTAAAGATTTATTAATATTACTGTATTATGAAGCAGGGTGTGGCTGAAAGCCGCTGGAATGATTGCTAATGAGAGACGAGTGCGACACAGCTCGAGAGCAGCGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU545316 lncRNA upstream 54263 3745011 ~ 3754518 (+) True G475233
TU545525 lncRNA upstream 80692 3722943 ~ 3728089 (+) True CI01000330_03723197_03728117
TU545315 lncRNA upstream 104486 3703324 ~ 3704295 (+) True G475232
TU545320 lncRNA upstream 120844 3685096 ~ 3687937 (+) True G475237
TU545508 lncRNA upstream 126873 3681658 ~ 3681908 (+) True G475415
TU545567 lncRNA downstream 25303 3834298 ~ 3834518 (+) True CI01000330_03814548_03834503
TU545568 lncRNA downstream 120448 3929443 ~ 3929668 (+) True G475464
TU545574 lncRNA downstream 125271 3934266 ~ 3934526 (+) True G475470
TU545588 lncRNA downstream 177615 3986610 ~ 3991612 (+) True G475482
TU546228 lncRNA downstream 298562 4107557 ~ 4107797 (+) True G476045
CI01000330_03779829_03785869.mRNA mRNA upstream 21914 3779829 ~ 3786867 (+) True CI01000330_03779829_03785869
CI01000330_03771375_03773835.mRNA mRNA upstream 34841 3770386 ~ 3773940 (+) True CI01000330_03771375_03773835
CI01000330_03723197_03728117.mRNA mRNA upstream 80570 3723129 ~ 3728211 (+) False CI01000330_03723197_03728117
CI01000330_03692275_03699509.mRNA mRNA upstream 109252 3691985 ~ 3699529 (+) True CI01000330_03692275_03699509
CI01000330_03670667_03672729.mRNA mRNA upstream 135652 3670467 ~ 3673129 (+) True CI01000330_03670667_03672729
CI01000330_03814548_03834503.mRNA mRNA downstream 5300 3814295 ~ 3834607 (+) False CI01000330_03814548_03834503
CI01000330_03852880_03865462.mRNA mRNA downstream 43885 3852880 ~ 3865853 (+) True CI01000330_03852880_03865462
CI01000330_04011467_04016798.mRNA mRNA downstream 202472 4011467 ~ 4017357 (+) True CI01000330_04011467_04016798
CI01000330_04025928_04040081.mRNA mRNA downstream 216722 4025717 ~ 4040241 (+) True CI01000330_04025928_04040081
CI01000330_04061721_04074563.mRNA mRNA downstream 252726 4061721 ~ 4074621 (+) True CI01000330_04061721_04074563
TU545514 other upstream 91362 3716544 ~ 3717419 (+) True G475421
TU545319 other upstream 218284 3585475 ~ 3590497 (+) True G475236
TU545318 other upstream 717548 3072547 ~ 3091233 (+) True G475235
TU544868 other upstream 1132339 2675912 ~ 2676442 (+) True G474819
TU544867 other upstream 1132363 2675912 ~ 2676418 (+) False G474819
TU545589 other downstream 184031 3993026 ~ 3993938 (+) True G475483

Expression Profile