RNA id: TU545574


Basic Information

Item Value
RNA id TU545574
length 261
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G475470
representative True

Chromosome Information

Item Value
chromosome id CI01000330
NCBI id null
chromosome length 4651236
location 3934266 ~ 3934526 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CACGGCCCCAGGCAGAGAAACTGGCAGGGAGATCCACGGGGAATGAAGGAATATTGTGCACAGGAGCAGTCAGCTTCAAAGCAGGCTTACTGTGCATTATTAAAAGCCTCCTCGACACCTGCACAGTCGGCAGGAGACACAACAGATGCGCAGCGAGGGCAGAAACACACTCTGGGGGCGAATGCATGAATGTATACGTCTACAGCAGGCCGAGCACACACACTGTGCAGGTGCAAGATAAAGATCAAGCCAAGATAGAGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU545568 lncRNA upstream 4598 3929443 ~ 3929668 (+) True G475464
TU545567 lncRNA upstream 99748 3834298 ~ 3834518 (+) True CI01000330_03814548_03834503
TU545566 lncRNA upstream 125271 3808781 ~ 3808995 (+) True G475462
TU545316 lncRNA upstream 179748 3745011 ~ 3754518 (+) True G475233
TU545525 lncRNA upstream 206177 3722943 ~ 3728089 (+) True CI01000330_03723197_03728117
TU545588 lncRNA downstream 52084 3986610 ~ 3991612 (+) True G475482
TU546228 lncRNA downstream 173031 4107557 ~ 4107797 (+) True G476045
TU546319 lncRNA downstream 373970 4308496 ~ 4308805 (+) True G476108
TU546330 lncRNA downstream 385014 4319540 ~ 4319822 (+) True G476113
TU546334 lncRNA downstream 386225 4320751 ~ 4324343 (+) False G476115
CI01000330_03852880_03865462.mRNA mRNA upstream 68413 3852880 ~ 3865853 (+) True CI01000330_03852880_03865462
CI01000330_03814548_03834503.mRNA mRNA upstream 99659 3814295 ~ 3834607 (+) False CI01000330_03814548_03834503
CI01000330_03779829_03785869.mRNA mRNA upstream 147399 3779829 ~ 3786867 (+) True CI01000330_03779829_03785869
CI01000330_03771375_03773835.mRNA mRNA upstream 160326 3770386 ~ 3773940 (+) True CI01000330_03771375_03773835
CI01000330_03723197_03728117.mRNA mRNA upstream 206055 3723129 ~ 3728211 (+) False CI01000330_03723197_03728117
CI01000330_04011467_04016798.mRNA mRNA downstream 76941 4011467 ~ 4017357 (+) True CI01000330_04011467_04016798
CI01000330_04025928_04040081.mRNA mRNA downstream 91191 4025717 ~ 4040241 (+) True CI01000330_04025928_04040081
CI01000330_04061721_04074563.mRNA mRNA downstream 127195 4061721 ~ 4074621 (+) True CI01000330_04061721_04074563
CI01000330_04098886_04101731.mRNA mRNA downstream 163572 4098098 ~ 4101806 (+) True CI01000330_04098886_04101731
CI01000330_04109116_04119729.mRNA mRNA downstream 174590 4109116 ~ 4120304 (+) True CI01000330_04109116_04119729
TU545514 other upstream 216847 3716544 ~ 3717419 (+) True G475421
TU545319 other upstream 343769 3585475 ~ 3590497 (+) True G475236
TU545318 other upstream 843033 3072547 ~ 3091233 (+) True G475235
TU544868 other upstream 1257824 2675912 ~ 2676442 (+) True G474819
TU544867 other upstream 1257848 2675912 ~ 2676418 (+) False G474819
TU545589 other downstream 58500 3993026 ~ 3993938 (+) True G475483

Expression Profile