RNA id: TU546330


Basic Information

Item Value
RNA id TU546330
length 283
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G476113
representative True

Chromosome Information

Item Value
chromosome id CI01000330
NCBI id null
chromosome length 4651236
location 4319540 ~ 4319822 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTAAAAGTCTCTATGAACAGGAGCATATTAAAATGCAGATAAATCAACTCATCAAATTACAGTGTGTAAGTCCTCGCCTTCCACTGTAAATTGTGCTCGCTTCTGTTGCGTGTCCTCAATCTGGCAACCTGTGTGAGTGTTGACTAGGGAAGAGGGGGCAGGGAAACAACTCTTTCCAATATTTTGAATTTGGACTGCAGTACCCATTTCAACTGCTAGCTGTCAATATTACATACTGCACCTTTAAAGGTGAAGTTTGTATTTTCTGTGGCACTATAGGCAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU546319 lncRNA upstream 10735 4308496 ~ 4308805 (+) True G476108
TU546228 lncRNA upstream 211743 4107557 ~ 4107797 (+) True G476045
TU545588 lncRNA upstream 327928 3986610 ~ 3991612 (+) True G475482
TU545574 lncRNA upstream 385014 3934266 ~ 3934526 (+) True G475470
TU545568 lncRNA upstream 389872 3929443 ~ 3929668 (+) True G475464
TU546334 lncRNA downstream 929 4320751 ~ 4324343 (+) False G476115
TU546336 lncRNA downstream 929 4320751 ~ 4324343 (+) False G476115
TU546337 lncRNA downstream 929 4320751 ~ 4324343 (+) True G476115
TU546345 lncRNA downstream 11865 4331687 ~ 4331957 (+) True G476123
TU546353 lncRNA downstream 55290 4375112 ~ 4439836 (+) True G476129
CI01000330_04126471_04281733.mRNA mRNA upstream 37807 4126471 ~ 4281733 (+) True CI01000330_04126471_04281733
CI01000330_04109116_04119729.mRNA mRNA upstream 199236 4109116 ~ 4120304 (+) True CI01000330_04109116_04119729
CI01000330_04098886_04101731.mRNA mRNA upstream 217734 4098098 ~ 4101806 (+) True CI01000330_04098886_04101731
CI01000330_04061721_04074563.mRNA mRNA upstream 244919 4061721 ~ 4074621 (+) True CI01000330_04061721_04074563
CI01000330_04025928_04040081.mRNA mRNA upstream 279299 4025717 ~ 4040241 (+) True CI01000330_04025928_04040081
CI01000330_04356072_04383072.mRNA mRNA downstream 35842 4355664 ~ 4383193 (+) True CI01000330_04356072_04383072
CI01000330_04384117_04388414.mRNA mRNA downstream 64093 4383915 ~ 4388465 (+) True CI01000330_04384117_04388414
CI01000330_04491976_04518040.mRNA mRNA downstream 172154 4491976 ~ 4518040 (+) False CI01000330_04491976_04518040
CI01000330_04549486_04558357.mRNA mRNA downstream 229664 4549486 ~ 4559100 (+) True CI01000330_04549486_04558357
CI01000330_04561065_04566268.mRNA mRNA downstream 241024 4560846 ~ 4566515 (+) True CI01000330_04561065_04566268
TU545589 other upstream 325602 3993026 ~ 3993938 (+) True G475483
TU545514 other upstream 602121 3716544 ~ 3717419 (+) True G475421
TU545319 other upstream 729043 3585475 ~ 3590497 (+) True G475236
TU545318 other upstream 1228307 3072547 ~ 3091233 (+) True G475235
TU544868 other upstream 1643098 2675912 ~ 2676442 (+) True G474819

Expression Profile