RNA id: TCONS_00001605


Basic Information

Item Value
RNA id TCONS_00001605
length 647
RNA type mRNA
GC content 0.39
exon number 2
gene id XLOC_001009
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 8978905 ~ 8980671 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAcgacaatgggctatatgcacgcaTTACTTCCGCGTTTTGTCTAAGGCCGCGGTCCAGCTTCCGGTCTGGGTGATTTTAAGCGGAGGTAAACAGTATTATGGCAGAGTCGTCAATATTTACTCGCTGTTTGCGAGTAAATTATGGTCAACGATGTGCAAATGATTGTCCGGATGTGCTCTACAACACCGCAGAGCAAAGCTTGAGAAAGGTTTCAAGTTGTATGCATCTTCCTACCTGTGCAATTATGAAGGTAACATTATGAGATTCAGAGCTAGAAAATTTTATGTGTTACTTCATCCTGGAGCGGACATCCGTCAGAAGATCCATGCCATCGTCTGCTAGTTAATAGCTCCTGCTCTTGTGTGGCTGAGAGtgggatatgcaaacatttggttgCTTTGCTTTTCCAGACAGTCCATTactctgaaatgtgtaatgtttgttgtcacatgaacaattgtttggaatggatcaattatgtgttaagttccatgaaacagaggggtgatttatttatttatttaatacgtaTAAGCCCAAATACCTCTCTATGCACAAGTTACAGAAGAAGCACCTGATTCAAGAAAACAATTGattcaatgtcatttttttctgttcatctgaataaaatatttttttcaaaa

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001706 endoderm formation biological_process
GO:0007492 endoderm development biological_process
GO:0002030 inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0038092 nodal signaling pathway biological_process
GO:0032925 regulation of activin receptor signaling pathway biological_process
GO:0009888 tissue development biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:1904323 regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:1904325 positive regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0051281 positive regulation of release of sequestered calcium ion into cytosol biological_process
GO:0007369 gastrulation biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:1900107 regulation of nodal signaling pathway biological_process
GO:0010524 positive regulation of calcium ion transport into cytosol biological_process
GO:1903587 regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:1903589 positive regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:0001702 gastrulation with mouth forming second biological_process
GO:0003676 nucleic acid binding molecular_function
GO:0060182 apelin receptor activity molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-090312-62 No description available

Ensembl:

ensembl_id ENSDART00000148182

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00001604 lncRNA downstream 945 8974500 ~ 8977963 (-) True XLOC_001008
TCONS_00003336 lncRNA downstream 948 8974500 ~ 8977960 (-) False XLOC_001008
TCONS_00001597 lncRNA downstream 326260 8650109 ~ 8652648 (-) False XLOC_001004
TCONS_00001590 lncRNA downstream 353642 8615853 ~ 8625266 (-) False XLOC_001002
TCONS_00002917 lncRNA downstream 353966 8612575 ~ 8624942 (-) False XLOC_001002
TCONS_00003338 lncRNA upstream 101177 9081842 ~ 9082772 (-) True XLOC_001010
TCONS_00003339 lncRNA upstream 157973 9138638 ~ 9139160 (-) True XLOC_001015
TCONS_00001614 lncRNA upstream 176645 9157310 ~ 9162637 (-) True XLOC_001016
TCONS_00001626 lncRNA upstream 327606 9308271 ~ 9314795 (-) False XLOC_001023
TCONS_00001627 lncRNA upstream 333843 9314508 ~ 9321931 (-) True XLOC_001023
TCONS_00001602 mRNA downstream 12862 8962624 ~ 8966046 (-) False XLOC_001007
TCONS_00001603 mRNA downstream 15424 8962853 ~ 8963484 (-) True XLOC_001007
TCONS_00001600 mRNA downstream 50067 8763429 ~ 8928841 (-) False XLOC_001006
TCONS_00001601 mRNA downstream 61006 8765624 ~ 8917902 (-) True XLOC_001006
TCONS_00001599 mRNA downstream 286939 8673061 ~ 8691969 (-) True XLOC_001005
TCONS_00001606 mRNA upstream 119782 9100447 ~ 9104631 (-) False XLOC_001011
TCONS_00001607 mRNA upstream 119808 9100473 ~ 9114936 (-) False XLOC_001011
TCONS_00001608 mRNA upstream 124374 9105039 ~ 9109699 (-) False XLOC_001011
TCONS_00001609 mRNA upstream 132965 9113630 ~ 9115034 (-) True XLOC_001011
TCONS_00001611 mRNA upstream 137435 9118100 ~ 9123465 (-) True XLOC_001012
TCONS_00001595 other downstream 326253 8650109 ~ 8652655 (-) False XLOC_001004
TCONS_00001587 other downstream 425610 8552750 ~ 8553298 (-) True XLOC_000999
TCONS_00001570 other downstream 1003139 7970406 ~ 7975769 (-) True XLOC_000989
TCONS_00001564 other downstream 1058702 7920119 ~ 7920206 (-) True XLOC_000985
TCONS_00001563 other downstream 1059341 7919480 ~ 7919567 (-) True XLOC_000984
TCONS_00001610 other upstream 137435 9118100 ~ 9118671 (-) False XLOC_001012
TCONS_00001617 other upstream 217194 9197859 ~ 9197966 (-) True XLOC_001018
TCONS_00001629 other upstream 479345 9460010 ~ 9486080 (-) False XLOC_001025
TCONS_00001646 other upstream 760137 9740802 ~ 9816875 (-) True XLOC_001029
TCONS_00001656 other upstream 1082836 10063501 ~ 10064568 (-) False XLOC_001036

Expression Profile

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