RNA id: CI01000335_00077557_00081374.mRNA


Basic Information

Item Value
RNA id CI01000335_00077557_00081374.mRNA
length 2336
RNA type mRNA
GC content 0.34
exon number 4
gene id CI01000335_00077557_00081374
representative False

Chromosome Information

Item Value
chromosome id CI01000335
NCBI id null
chromosome length 1176510
location 75813 ~ 81486 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTATATAAGAAGGCCAATTTTCTTGTATGTTCAGTCTCGATCTGACATCCTCTCAGTTGTGACTCAGTTTTTGCTCTTTGCATTTTATACCAACGAGATCTCATCTAAATTTGCTTTTCATAGGCAAGAGCATTTTTCTCAGACTTATAGATTTTATACTTAGATTTTTGATTAACATTATATTCAGATTGGGTTAACATAATACTAAACTTTTGATTAAGATTTTTACTAACATTTTTCTTTGATAATACTTTTTGGACTTCAATATTTCAGAGATATTGGAAGTTGATTTATAACTGTTTGTATTATTCTGTTATACAAATTTTTATCATCCAAAATCAATATGTCTCTCATTTACTTTCTGATTATACTTCGTTTAGCAATAAAATCGATTTAATCATCTGACCTTGGATCTCCTCATGCATCAATAATGTATCACACAAATGCAGTGTTTACAGTCAAATGTACTGGCTACACTTTATTTTAAGGTGCCCTTGTTACAGTGTAATTATACATTTAAGTACTGAGTAATATTAATTAACAACATGTACTTAATATAGGGTAGGGTTTAGGGTTAGTTGCATAATTTGCTGTTATTACCATAGTAAGCACATGTAACAAAGACACTGTAAATTAAAGTTGTAAAATTAATCATTTAAAATGACTCTAAAACATCCCAAGTGGGGACTGTCAGTGTAAATGTAAGACAAAAAATATTATTAAAATAATATTTGAAACATAGCCCATTAGATAAATGCAAAAGTACATAAAAAAAAAAAAACAACACACTGATGATATATATGCGTATGCTAATGATTTTATGGTAATACCTGGTTAGACGGTCGTCTGCTTGAAAAGTGAGACGTGTGACAGTTATACCGACTGCTTTCCTCTTGTTCACAGCCACTCTACAGCCTGAACACCTGCTGGTTCTGCCATCCAAATGGATTCATATCAATGGGAATTTACACCTACGTGTGCATTTTTTTGCCCACCCATAAAAATAACAGTGGGATCCACATTTGATAAACAAAACATCTAGAAATTCACACAATACCTGTGCATAATCAAATTATTATTTAAACCTGAAGAATATGCAAACTGCCCAGTCTAAGAAAAACTCTGTATGATGTATTTGTTTATAGGGACATAACATGAACTTTGTAAGTTATAGACTCTCTGACACTTGCTTTGTGAATGTGTTTTTAACCAAGCATATATAGAGTATTTAGTAAAGGAACTGTTTTTATTGCATCTGATGGGTAAACATATTCCATTTCAATACTTCATCTTGTACATGTGAACTTTGCTCGTATGATGGGTTGACCAGGGTGTCCATGAAAATACAAACAAATCTAGAGTTCTAGTATTCGTGAATTTTGACATTTTGTTTCCATATGCTTTGCATGTCTTTTTAAAGGAATTTACATGAAACTGGCCCACCAACAGAAAAACAAAACAATATAAAAAAAAATATAAAGGATGTTCCTTGAAACTGGCCCACCAAAATGATATCATCAAGATATTTGAATACTGACTCCTCTACACATCTTTTACAAAGCAGAGCATTCCCGTAATTCCCAAATAATTGTGTGGATTGATTTGCATTGAAATCAAATCGTGGCATGAAAACACATGTAGAATGTTATTCTTAGACCAAACAGTGTTTCTGCAATGTATTGCCAATGAGAAATTCACTCTTGGTTTCATGACTAATTGAGCATTTAATAGGATTACACTCTCAATGACTCTGAATATGTTGCACAGTAAGAGTTTTCTCTCTGATGTTGTCTTGGAAAGGCATCTGAAGGGAGGAGCCAGGAAGGAGGTGATTCCACATACAAATAAATCACCTGGAAACCTCCTTAACATAATCCCACACCATCACGGAGACGAAGGCGCTTATCAAAGGACTGACACATTAACAGATTTCGGAAATGGACCTCCAGTCGAAGCTCTTTTGAGGTTGATGAATGGTGTTGGCTTTTGTTCTGGACGAGTGGAGGTTCTCTATAATGGAATATGGGGAACAGTGTGTGATGATGGCTGGGATCTGTCAGATGCTGCAGTGCCCTTGTCAATGTTTTGCTTCACAGAAACTGTGAGACGAGTTGTGGTGAGGATTGTGGTGAAGGCCAAGACTGGAGTCAATGTCAATGACCCAGATATCAAGAAGAATCTTTTGGACATGTGTCAGGAAGAGAGAAAGACCAAAGTGAAATAAAGTAGAAGATTTTTTAATTATTTACAAGAATTGTATTTCAAAAAAAGAAGAAAAAAAAGTAAGTTCTGTGACACTTGATTAATCGGCTTTAAATTTATGTAACACCATATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU547694 lncRNA upstream 3161 72166 ~ 72652 (+) False G477300
TU547680 lncRNA upstream 49086 26180 ~ 26727 (+) True G477288
TU547665 lncRNA upstream 56181 18228 ~ 19632 (+) True G477276
TU547751 lncRNA downstream 92916 174402 ~ 174618 (+) True G477346
TU547752 lncRNA downstream 93752 175238 ~ 175473 (+) True G477347
TU547753 lncRNA downstream 94735 176221 ~ 176458 (+) True G477348
TU547833 lncRNA downstream 102978 184464 ~ 184694 (+) True G477407
TU547835 lncRNA downstream 107696 189182 ~ 189439 (+) True G477409
CI01000335_00103583_00132304.mRNA mRNA downstream 21986 103472 ~ 132429 (+) True CI01000335_00103583_00132304
CI01000335_00149953_00163006.mRNA mRNA downstream 68467 149953 ~ 163539 (+) True CI01000335_00149953_00163006
CI01000335_00193513_00197704.mRNA mRNA downstream 110387 191873 ~ 197764 (+) False CI01000335_00193513_00197704
CI01000335_00286459_00296460.mRNA mRNA downstream 203241 284727 ~ 297256 (+) True CI01000335_00286459_00296460
CI01000335_00489106_00492720.mRNA mRNA downstream 407202 488688 ~ 492973 (+) True CI01000335_00489106_00492720
TU547947 other downstream 468036 549522 ~ 554633 (+) True G477502

Expression Profile