RNA id: TU547841


Basic Information

Item Value
RNA id TU547841
length 502
lncRNA type sense_over
GC content 0.43
exon number 1
gene id CI01000335_00193513_00197704
representative True

Chromosome Information

Item Value
chromosome id CI01000335
NCBI id null
chromosome length 1176510
location 191873 ~ 197764 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGGTTAAAAACAGCTTTAATTGGGTCCAGAGGATACAACATACCACTCTCTTCAAAGACATAATTGAAATTAAGTTGAGACATCCGTTGCTTGACACAATCACCTCGTTGAAAATGATTGAAGTTGCATTATTGTCAACAGAGGGGCTCGGAAATCTGTGCAACGCCTCATAAGTTTGGAAAGAAAATCAAAGCAACTGAATCAAAGTTTTACAATAACAACAGGAGGCAGCGGCAGTGGCAATATTGTCATCCTCCTGTCAGTCGATGGGTTAATTGGGATGCGCGGTGATTCCTCTGTTGAGCAAACACGAGCTTTGAAGGTGACTAGGAGAAGTGCGTGGCCCCATGATTGCCCCCCGCTTGTCATTTATCATAATTACTCTGAGCAGAAATTAGAACCGGCCCCTGTTCAAATTTTCCATCATGTCTGTTTTCCTTGGACACGTGCACCTCATCATCACCGAACGAATCAGCTGTCAATCATCTCAAAGATTGCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU547836 lncRNA upstream 6200 190784 ~ 190990 (+) True G477410
TU547835 lncRNA upstream 7751 189182 ~ 189439 (+) True G477409
TU547833 lncRNA upstream 12496 184464 ~ 184694 (+) True G477407
TU547753 lncRNA upstream 20732 176221 ~ 176458 (+) True G477348
TU547752 lncRNA upstream 21717 175238 ~ 175473 (+) True G477347
TU547849 lncRNA downstream 13102 210793 ~ 211595 (+) False G477422
TU547852 lncRNA downstream 13310 211001 ~ 211595 (+) True G477422
TU547862 lncRNA downstream 56330 254021 ~ 254235 (+) True G477430
TU547863 lncRNA downstream 76052 273743 ~ 273950 (+) True G477431
TU547867 lncRNA downstream 81877 279568 ~ 279783 (+) True G477435
CI01000335_00149953_00163006.mRNA mRNA upstream 33651 149953 ~ 163539 (+) True CI01000335_00149953_00163006
CI01000335_00103583_00132304.mRNA mRNA upstream 64761 103472 ~ 132429 (+) True CI01000335_00103583_00132304
CI01000335_00077557_00081374.mRNA mRNA upstream 115704 75813 ~ 81486 (+) False CI01000335_00077557_00081374
CI01000335_00286459_00296460.mRNA mRNA downstream 87036 284727 ~ 297256 (+) True CI01000335_00286459_00296460
CI01000335_00489106_00492720.mRNA mRNA downstream 290997 488688 ~ 492973 (+) True CI01000335_00489106_00492720
CI01000335_00526951_00528066.mRNA mRNA downstream 329260 526951 ~ 529658 (+) False CI01000335_00526951_00528066
CI01000335_00586957_00597421.mRNA mRNA downstream 389266 586957 ~ 598108 (+) True CI01000335_00586957_00597421
CI01000335_00681430_00741137.mRNA mRNA downstream 483739 681430 ~ 741222 (+) True CI01000335_00681430_00741137
TU547947 other downstream 351831 549522 ~ 554633 (+) True G477502

Expression Profile