RNA id: CI01000335_00884515_00888701.mRNA


Basic Information

Item Value
RNA id CI01000335_00884515_00888701.mRNA
length 574
RNA type mRNA
GC content 0.45
exon number 3
gene id CI01000335_00884515_00888701
representative True

Chromosome Information

Item Value
chromosome id CI01000335
NCBI id null
chromosome length 1176510
location 884338 ~ 888831 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTATATATGAAGAACCTAATTATGAAAACCAATAAAATCCCCCAGGGTAAAAATACAGTATTTCTCTCTAATTGGGCCTGATTGATTGAAAGCTTGTTCCCAACAGCAAGTGTCAGTCGATCTATTGGTGTAGCAGAGCATGGTTCTAAACATCTCTAGCTTGAGTGTTTTTACATAATGAGATCCCAGTTCTTCCAGTATATGCTGTATACCGCACCGTATGCCTCTACTACAGGTGGAGAAATAACAGCGGTCCTAACGTTGAGATTTTGCCGTGCGAATGAGGCAAAATCCAGCAGCTTTCAGAGGCGCATCTGCAGCCGCTCGTTCGGTTGTCACATTGACATGCCGCTGTCTGCCCAGCGGTCATTAATATCGGAACAGCCCCCGAGTCTCCAGAGAACAACCAATAGCGGCGGGGCGGAGAGAAACTCTCGCACCTGATTGGCTAAACAGCAACGTCTGTCAGACAAGAACCGTTAGAGAAATAAGGAGAGACAGAAGAAAATGGATATATGCTGGTATTAATTTCTGATTGTGTAGTATTTTGGGTTGTCTTTGGGGGACATTATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU547956 lncRNA upstream 3307 863693 ~ 881031 (+) True G477511
TU548103 lncRNA upstream 23541 860503 ~ 860797 (+) True G477651
TU548088 lncRNA upstream 65985 818147 ~ 818353 (+) True G477636
TU548056 lncRNA upstream 81266 717098 ~ 803072 (+) True G477605
TU547942 lncRNA upstream 257048 624798 ~ 627290 (+) True G477497
TU548115 lncRNA downstream 2018 890849 ~ 891075 (+) True G477660
TU548123 lncRNA downstream 15092 903923 ~ 904142 (+) True G477668
TU548124 lncRNA downstream 15397 904228 ~ 904453 (+) True G477669
TU548134 lncRNA downstream 23355 912186 ~ 912406 (+) True G477679
TU548136 lncRNA downstream 26247 915078 ~ 955515 (+) True G477681
CI01000335_00681430_00741137.mRNA mRNA upstream 143116 681430 ~ 741222 (+) True CI01000335_00681430_00741137
CI01000335_00586957_00597421.mRNA mRNA upstream 286230 586957 ~ 598108 (+) True CI01000335_00586957_00597421
CI01000335_00526951_00528066.mRNA mRNA upstream 354680 526951 ~ 529658 (+) False CI01000335_00526951_00528066
CI01000335_00489106_00492720.mRNA mRNA upstream 391365 488688 ~ 492973 (+) True CI01000335_00489106_00492720
CI01000335_00286459_00296460.mRNA mRNA upstream 587082 284727 ~ 297256 (+) True CI01000335_00286459_00296460
CI01000335_00930276_00934328.mRNA mRNA downstream 41445 930276 ~ 936380 (+) True CI01000335_00930276_00934328
CI01000335_00988268_00990978.mRNA mRNA downstream 99437 988268 ~ 991337 (+) True CI01000335_00988268_00990978
CI01000335_01029328_01043603.mRNA mRNA downstream 140497 1029328 ~ 1043603 (+) True CI01000335_01029328_01043603
CI01000335_01055918_01061590.mRNA mRNA downstream 167087 1055918 ~ 1061716 (+) True CI01000335_01055918_01061590
CI01000335_01109924_01114152.mRNA mRNA downstream 221093 1109924 ~ 1114152 (+) True CI01000335_01109924_01114152
TU547947 other upstream 329705 549522 ~ 554633 (+) True G477502

Expression Profile