RNA id: TU547868


Basic Information

Item Value
RNA id TU547868
length 206
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G477436
representative True

Chromosome Information

Item Value
chromosome id CI01000335
NCBI id null
chromosome length 1176510
location 280924 ~ 281129 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGGGCCCAAGACTGGCAGCTTGCACAGGTGAACATGCCGCAGCTGAAGAAGATGATTTGCGGGAGGAAGCGAAGACCCTTCTGAATCGTTTCCCTTCCTACTTCACTCTGGCCACATCCTCCCTTCCCTCCACCCCCCGCCACTTCCTGTCATTAAGCCTCTCACTGCCTGTCCCTAAAATAATCCCAGCAGTTTTTTGTCAATCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU547867 lncRNA upstream 1141 279568 ~ 279783 (+) True G477435
TU547863 lncRNA upstream 6974 273743 ~ 273950 (+) True G477431
TU547862 lncRNA upstream 26689 254021 ~ 254235 (+) True G477430
TU547849 lncRNA upstream 69329 210793 ~ 211595 (+) False G477422
TU547852 lncRNA upstream 69329 211001 ~ 211595 (+) True G477422
TU547870 lncRNA downstream 9678 290807 ~ 291031 (+) True G477438
TU547886 lncRNA downstream 37237 318366 ~ 318596 (+) True G477451
TU547888 lncRNA downstream 39726 320855 ~ 321097 (+) True G477453
TU547889 lncRNA downstream 40539 321668 ~ 321907 (+) True G477454
TU547891 lncRNA downstream 43633 324762 ~ 324963 (+) True G477456
CI01000335_00193513_00197704.mRNA mRNA upstream 83160 191873 ~ 197764 (+) False CI01000335_00193513_00197704
CI01000335_00149953_00163006.mRNA mRNA upstream 117385 149953 ~ 163539 (+) True CI01000335_00149953_00163006
CI01000335_00103583_00132304.mRNA mRNA upstream 148495 103472 ~ 132429 (+) True CI01000335_00103583_00132304
CI01000335_00077557_00081374.mRNA mRNA upstream 199438 75813 ~ 81486 (+) False CI01000335_00077557_00081374
CI01000335_00286459_00296460.mRNA mRNA downstream 3598 284727 ~ 297256 (+) True CI01000335_00286459_00296460
CI01000335_00489106_00492720.mRNA mRNA downstream 207559 488688 ~ 492973 (+) True CI01000335_00489106_00492720
CI01000335_00526951_00528066.mRNA mRNA downstream 245822 526951 ~ 529658 (+) False CI01000335_00526951_00528066
CI01000335_00586957_00597421.mRNA mRNA downstream 305828 586957 ~ 598108 (+) True CI01000335_00586957_00597421
CI01000335_00681430_00741137.mRNA mRNA downstream 400301 681430 ~ 741222 (+) True CI01000335_00681430_00741137
TU547947 other downstream 268393 549522 ~ 554633 (+) True G477502

Expression Profile