RNA id: TU547891


Basic Information

Item Value
RNA id TU547891
length 202
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G477456
representative True

Chromosome Information

Item Value
chromosome id CI01000335
NCBI id null
chromosome length 1176510
location 324762 ~ 324963 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTAATAGGTTAGACAAGCCCAGTCATTTACATTCACAGCTAACCCACAGGCAAGCTCATAGTCTTGTTACGCAGTTGAAAAAGTTGAAAAAATGCATATGAAAAGTTAAGACATACATTCAAAATATGTCTCAATGTGTCTCTTTCATTTTAAATCCAAAGCCGGTGTTGTCAGCGTTCGACTTCAAAAAGGCGAACCGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU547889 lncRNA upstream 2855 321668 ~ 321907 (+) True G477454
TU547888 lncRNA upstream 3665 320855 ~ 321097 (+) True G477453
TU547886 lncRNA upstream 6166 318366 ~ 318596 (+) True G477451
TU547870 lncRNA upstream 33731 290807 ~ 291031 (+) True G477438
TU547868 lncRNA upstream 43633 280924 ~ 281129 (+) True G477436
TU547892 lncRNA downstream 162 325125 ~ 325439 (+) True G477457
TU547893 lncRNA downstream 896 325859 ~ 326080 (+) True G477458
TU547875 lncRNA downstream 2921 327884 ~ 393126 (+) False G477441
TU547873 lncRNA downstream 4327 329290 ~ 393126 (+) True G477441
TU547969 lncRNA downstream 80090 405053 ~ 406281 (+) True G477523
CI01000335_00286459_00296460.mRNA mRNA upstream 27506 284727 ~ 297256 (+) True CI01000335_00286459_00296460
CI01000335_00193513_00197704.mRNA mRNA upstream 126998 191873 ~ 197764 (+) False CI01000335_00193513_00197704
CI01000335_00149953_00163006.mRNA mRNA upstream 161223 149953 ~ 163539 (+) True CI01000335_00149953_00163006
CI01000335_00103583_00132304.mRNA mRNA upstream 192333 103472 ~ 132429 (+) True CI01000335_00103583_00132304
CI01000335_00077557_00081374.mRNA mRNA upstream 243276 75813 ~ 81486 (+) False CI01000335_00077557_00081374
CI01000335_00489106_00492720.mRNA mRNA downstream 163725 488688 ~ 492973 (+) True CI01000335_00489106_00492720
CI01000335_00526951_00528066.mRNA mRNA downstream 201988 526951 ~ 529658 (+) False CI01000335_00526951_00528066
CI01000335_00586957_00597421.mRNA mRNA downstream 261994 586957 ~ 598108 (+) True CI01000335_00586957_00597421
CI01000335_00681430_00741137.mRNA mRNA downstream 356467 681430 ~ 741222 (+) True CI01000335_00681430_00741137
CI01000335_00884515_00888701.mRNA mRNA downstream 559375 884338 ~ 888831 (+) True CI01000335_00884515_00888701
TU547947 other downstream 224559 549522 ~ 554633 (+) True G477502

Expression Profile