RNA id: TU547893


Basic Information

Item Value
RNA id TU547893
length 222
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G477458
representative True

Chromosome Information

Item Value
chromosome id CI01000335
NCBI id null
chromosome length 1176510
location 325859 ~ 326080 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAGTGTAGTTTTCAAGTCATTTTTGCCACTTCTCAATTGTATTTTAGTAAAAAACAATTTTTGATCAAGATCTAAACATTCAGCAAAATGATAAGAAAACAAAAATATTGAATGCAAAACATCCCCAGCCATTGTCACAGTCAATTAAGTGTGGCTAGGTAATGAGGCCATTTGCATTGTAAAGCATCCCCCATGTGTGAGGGTTTTAATGGGGACAGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU547892 lncRNA upstream 420 325125 ~ 325439 (+) True G477457
TU547891 lncRNA upstream 896 324762 ~ 324963 (+) True G477456
TU547889 lncRNA upstream 3952 321668 ~ 321907 (+) True G477454
TU547888 lncRNA upstream 4762 320855 ~ 321097 (+) True G477453
TU547886 lncRNA upstream 7263 318366 ~ 318596 (+) True G477451
TU547875 lncRNA downstream 1804 327884 ~ 393126 (+) False G477441
TU547873 lncRNA downstream 3210 329290 ~ 393126 (+) True G477441
TU547969 lncRNA downstream 78973 405053 ~ 406281 (+) True G477523
TU547932 lncRNA downstream 197634 523714 ~ 526896 (+) True G477489
TU547940 lncRNA downstream 202698 537654 ~ 538075 (+) True G477495
CI01000335_00286459_00296460.mRNA mRNA upstream 28603 284727 ~ 297256 (+) True CI01000335_00286459_00296460
CI01000335_00193513_00197704.mRNA mRNA upstream 128095 191873 ~ 197764 (+) False CI01000335_00193513_00197704
CI01000335_00149953_00163006.mRNA mRNA upstream 162320 149953 ~ 163539 (+) True CI01000335_00149953_00163006
CI01000335_00103583_00132304.mRNA mRNA upstream 193430 103472 ~ 132429 (+) True CI01000335_00103583_00132304
CI01000335_00077557_00081374.mRNA mRNA upstream 244373 75813 ~ 81486 (+) False CI01000335_00077557_00081374
CI01000335_00489106_00492720.mRNA mRNA downstream 162608 488688 ~ 492973 (+) True CI01000335_00489106_00492720
CI01000335_00526951_00528066.mRNA mRNA downstream 200871 526951 ~ 529658 (+) False CI01000335_00526951_00528066
CI01000335_00586957_00597421.mRNA mRNA downstream 260877 586957 ~ 598108 (+) True CI01000335_00586957_00597421
CI01000335_00681430_00741137.mRNA mRNA downstream 355350 681430 ~ 741222 (+) True CI01000335_00681430_00741137
CI01000335_00884515_00888701.mRNA mRNA downstream 558258 884338 ~ 888831 (+) True CI01000335_00884515_00888701
TU547947 other downstream 223442 549522 ~ 554633 (+) True G477502

Expression Profile