RNA id: TU547875


Basic Information

Item Value
RNA id TU547875
length 395
lncRNA type read_through
GC content 0.39
exon number 3
gene id G477441
representative False

Chromosome Information

Item Value
chromosome id CI01000335
NCBI id null
chromosome length 1176510
location 327884 ~ 393126 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGCCATCCAAGGCTTTCTTTCTTTCTTTTCTTAATAAAAAAATTAAGGTTGTTGAGGTAAACACAACGTGTGACCTTTCCAACGTGATTACGTAATGCGTGGCACATCGCAGAGCTAGTGCAAGAAGAGCATCTGTGGTTAAAAAGTATATAAATTTTTCTTAGAAAATGACCAATTGTTTCGCTAGATAAGACCTTTATTCCTTGTCTGGGTTCGTGTAGAGCCCTTTGAAGCTGCACTGAAGCTGCAATTTGGACCTTCAACACATTGGCAGCCATTGAAGTCCACTATATGGAGAAAAATCCTGGAACCTTTTCCTCAAAAACCATAATTTCTTTTCAACTGAAGAAAGAAAGACAAACATCTTGGATGACATGGGGGTGACCAAACCACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU547893 lncRNA upstream 1804 325859 ~ 326080 (+) True G477458
TU547892 lncRNA upstream 2445 325125 ~ 325439 (+) True G477457
TU547891 lncRNA upstream 2921 324762 ~ 324963 (+) True G477456
TU547889 lncRNA upstream 5977 321668 ~ 321907 (+) True G477454
TU547888 lncRNA upstream 6787 320855 ~ 321097 (+) True G477453
TU547969 lncRNA downstream 11927 405053 ~ 406281 (+) True G477523
TU547932 lncRNA downstream 130588 523714 ~ 526896 (+) True G477489
TU547940 lncRNA downstream 135652 537654 ~ 538075 (+) True G477495
TU547950 lncRNA downstream 162122 555248 ~ 612384 (+) True G477505
TU548039 lncRNA downstream 228838 621964 ~ 622163 (+) True G477588
CI01000335_00286459_00296460.mRNA mRNA upstream 30628 284727 ~ 297256 (+) True CI01000335_00286459_00296460
CI01000335_00193513_00197704.mRNA mRNA upstream 130120 191873 ~ 197764 (+) False CI01000335_00193513_00197704
CI01000335_00149953_00163006.mRNA mRNA upstream 164345 149953 ~ 163539 (+) True CI01000335_00149953_00163006
CI01000335_00103583_00132304.mRNA mRNA upstream 195455 103472 ~ 132429 (+) True CI01000335_00103583_00132304
CI01000335_00077557_00081374.mRNA mRNA upstream 246398 75813 ~ 81486 (+) False CI01000335_00077557_00081374
CI01000335_00489106_00492720.mRNA mRNA downstream 95562 488688 ~ 492973 (+) True CI01000335_00489106_00492720
CI01000335_00526951_00528066.mRNA mRNA downstream 133825 526951 ~ 529658 (+) False CI01000335_00526951_00528066
CI01000335_00586957_00597421.mRNA mRNA downstream 193831 586957 ~ 598108 (+) True CI01000335_00586957_00597421
CI01000335_00681430_00741137.mRNA mRNA downstream 288304 681430 ~ 741222 (+) True CI01000335_00681430_00741137
CI01000335_00884515_00888701.mRNA mRNA downstream 491212 884338 ~ 888831 (+) True CI01000335_00884515_00888701
TU547947 other downstream 156396 549522 ~ 554633 (+) True G477502

Expression Profile