Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU547932 |
| length | 851 |
| lncRNA type | inter_gene |
| GC content | 0.46 |
| exon number | 2 |
| gene id | G477489 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000335 |
| NCBI id | null |
| chromosome length | 1176510 |
| location | 523714 ~ 526896 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU547969 | lncRNA | upstream | 117433 | 405053 ~ 406281 (+) | True | G477523 |
| TU547875 | lncRNA | upstream | 130588 | 327884 ~ 393126 (+) | False | G477441 |
| TU547873 | lncRNA | upstream | 130588 | 329290 ~ 393126 (+) | True | G477441 |
| TU547893 | lncRNA | upstream | 197634 | 325859 ~ 326080 (+) | True | G477458 |
| TU547892 | lncRNA | upstream | 198275 | 325125 ~ 325439 (+) | True | G477457 |
| TU547940 | lncRNA | downstream | 1882 | 537654 ~ 538075 (+) | True | G477495 |
| TU547950 | lncRNA | downstream | 28352 | 555248 ~ 612384 (+) | True | G477505 |
| TU548039 | lncRNA | downstream | 95068 | 621964 ~ 622163 (+) | True | G477588 |
| TU548040 | lncRNA | downstream | 95844 | 622740 ~ 623214 (+) | True | G477589 |
| TU547942 | lncRNA | downstream | 97902 | 624798 ~ 627290 (+) | True | G477497 |
| CI01000335_00489106_00492720.mRNA | mRNA | upstream | 30741 | 488688 ~ 492973 (+) | True | CI01000335_00489106_00492720 |
| CI01000335_00286459_00296460.mRNA | mRNA | upstream | 226458 | 284727 ~ 297256 (+) | True | CI01000335_00286459_00296460 |
| CI01000335_00193513_00197704.mRNA | mRNA | upstream | 325950 | 191873 ~ 197764 (+) | False | CI01000335_00193513_00197704 |
| CI01000335_00149953_00163006.mRNA | mRNA | upstream | 360175 | 149953 ~ 163539 (+) | True | CI01000335_00149953_00163006 |
| CI01000335_00103583_00132304.mRNA | mRNA | upstream | 391285 | 103472 ~ 132429 (+) | True | CI01000335_00103583_00132304 |
| CI01000335_00526951_00528066.mRNA | mRNA | downstream | 55 | 526951 ~ 529658 (+) | False | CI01000335_00526951_00528066 |
| CI01000335_00586957_00597421.mRNA | mRNA | downstream | 60061 | 586957 ~ 598108 (+) | True | CI01000335_00586957_00597421 |
| CI01000335_00681430_00741137.mRNA | mRNA | downstream | 154534 | 681430 ~ 741222 (+) | True | CI01000335_00681430_00741137 |
| CI01000335_00884515_00888701.mRNA | mRNA | downstream | 357442 | 884338 ~ 888831 (+) | True | CI01000335_00884515_00888701 |
| CI01000335_00930276_00934328.mRNA | mRNA | downstream | 403380 | 930276 ~ 936380 (+) | True | CI01000335_00930276_00934328 |
| TU547947 | other | downstream | 22626 | 549522 ~ 554633 (+) | True | G477502 |
