RNA id: TU547947



Basic Information


Item Value
RNA id TU547947
length 5112
RNA type TUCP
GC content 0.40
exon number 1
gene id G477502
representative True

Chromosome Information


Item Value
chromosome id CI01000335
NCBI id null
chromosome length 1176510
location 549522 ~ 554633 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TGGTTTCGCTAGATAAGACCCTTATTCCTCGTCCGGTATCGTTTAAAGCCCTTTGAAGCTGCACTGAAACTGTAATTTTGACCTTCAACCATTTAGGGCCAATTAAAGTCCACTATAAGGAGAATAATCTTGAAATGTTTTAATCAAAAACCTTAATTTCTTTTCGACTGAAGAAAGAAAGACATGGACATCTTGGATGACATGGGGGTGAGTAAATTTTAAGGAAATTTTTATTTGAAAGTGAACTAATCCTTTAATGGGAACGTTACTAAAACATTCTTAGAACATACCATTATTGTAGGGCGGAAACCTCATCTCCATATTTCATCATTTTCATTTTTTTGCATAAATCCTTACTATTAGTTCACATTTACGTCTGTCTGTGAGTTTTGCAAATATTTAACCAATGAAAAAGAGCTTGTGACTAAAACTGGATCCTCAAACTGTCAGTCAAACCTCATAACTCCACCCCACCTCTATCGTGAATGAAGTGCTGCACGCAATTTGAATCATCTCTGCTTGTTTGCAATGCAGGGGTAAATAAAGAACTAGTTCTTTGAAATAGTACAGCATTTTCTTTACTCAAGAAGCACTACATTAAGGCTAATGTTTTATGTATTTGAGGAGTGTAGAAGAGTCAAAGGCTTAGATATACAAAGACAGTGCACTCATATTACTAAAGTGCAATGCGCAATATAGAAGAATAGTCCCACCTTCTAAATAAAACAGCCAATCGCTGATTAATAAAGTCATCACATCACTGCAGCTGCCATTAGTAGCTCATGTTGCATTGTTCTAAGATAGGGCTGAACATATACGCATTGGCTGGCCTAGCCTGAAAAATAGGCTTTTTTAACACTATTTAAACATAAGAAACAACATTTATGGGACAGTTCATGTCAAATTTTGTTATTTAATTGTGAGTTCAGCTAGCAGTTTTTGAGACTATCAGTATTCCCCCATTCAAGTAGATATGGCTTAGTCTTGGATGCCTGACATAGCTGTCTGGAGGCGTTGCAAATATGGCCACTGATTGAACAGACTTTCCTTGAAAGGGACTTTGGAAGAGTGTCTCACTCTAGCATTTGTCACCGAGTCATAGCCAGCACTGTATTAACTAAGCCTATGCATAGTACTTTGTCTTTAATAACATGAGATTTTGGCCAAATTACAAAACAACAACAACAACAACAAAAAACTGAGCACCCACATAGCTACAGTAAACTTTATAATCTGTAAGTTAATCAAAACGTTAATGCGATGCACTTACTGCCTCAGACGTGGCCATTCTAATGACAGACTAAACACGTATATCCAAAATCCTCAGAAATTCGCTGGTCAAAAACCTCATAACTCAATTGTAGCTTGTTTTTGGTTAGCTGGGTATAAGCTATTTTATAGTTCAAAGGGCGGCTCTCAAGTCAGAAACCTGTGTTTGGTCAAAGCAGGTGTCGGTGCCGCTCTCTGTCCCTACATGCATCTCTGTCTCTCTTATCTTTGGGGACCAATGCTCCAGCAGCATGTTTGTGCCAGGGCCTCAACTCAAGATAAAGTTAAAAGTAAAATCCTGCAGCCAACAACCTCTCGGTCTCAGATAAGCATCCCGTGTTTGCAGGTCCTGCAGGGTGTTTGGTGGAAAGAAGAGCAACAAGAATTAATGGAGACAAAATGGTTACACCATAGCCATCTTTTTTTTTTGCTGTCTACTAACCCCAAAACCTCCAACTGATGAATGGATGCTTAAACAGATAGGTCACTGCTTTTTTCTTCAAATTCTCAAGAGAAACTTTATTTATTTCAAAACAAAAATATAAGCTCAGGATAACAAACTGAGTGTGAATGTTTGCTTCAGAGGAATGAGTATTTCCACTGCACACTTAATCAATACGCATCATAGTGAATTAGGCCATGTAGACAGGGCCGAGCCATCAGCACAGCGGCTTTCGGAAGCCTCAGGGATCTCTGATCTATCTGTTAATGTACAGTTCGCTGGCTGAGCCAAACTAATCCTCTTCAGGTCCATCCCTAACATTGACTCAGTGTTGTACAACATGCTATTATATCACAACAGAGGAACGCTCTATTACTCATGTGCGTGTGTGTCGTTTTGGAGATTTGAGCCTGGTGGTGTGGGTGCATGACCCTCTTTTTCTTCCTTTTCCAGTCGAAATCTCTTAAAGGACACATAAAATGGCATTCTGCAAAACATTTAACTTCTTTACTGAATAAAACAGAATATTTAGTGGTCAGAATTTGATTGGATAATGAAAAGTAGGTTATTTTCAGTTAAATATCATGTTGCTCTACCTGTACTGTGTACCATTTAAAATATTCCAACATATTCCAACCATGAAGTTGTTCCATCGCCCAATTTTTTTTTTTTTTAAGGAATCAAAAAAGATTTGCTAACATTAGCTTTGCAGGTTTGATTATCAACAGAGCGACATCAACTGCGATGCTAGCATTTGTGATTATCAACAGGACCATTTACCATTTTTTACCCACCTGGTTTTATTACCAACTCATGTTGGAAATTTGACTCAGTGATGCATTTTATTTGCTTGAAAGTCAACATTTATCATCAATTTATCATCTCTCCGGGTGCTGCCATGTTTGTGCAGTCTTCAAGTGTTATTCAGTTGCATTATTTCCCAACAGGAAGGTGGATTTTTTTCCTGCAGAAAAAAAGGCAGAGAAAAATCACAATTTGATGAAAGATTTACATTGTTACAAATGATTCTATTTCAAGTAAATGCTGTTTTATTTTTTCTATTCATCAAAGAATCCTGAAAAAAAACCCCAAAGGTTTCCACAAAAATATTAAGCAGCACTTTTTTTAACATTGATAATAAGAAATGTTTCTTGAGCAGTAAATCAACATATTAGAATGATTTCTGAAGACACAACGAAGAATAAGTAATAGCTGCTAAAAAATTAAGCTTTGTCACCACAGAAATAATTGTACAATATTACTGTTTTTACTGTATTTTTGAACAAATATATATATTTATTTATTTAAATCTTATAGACCCTTCTTTCAAAAACATTAAAGAATCTTACCGACCCTAAACGTTTAAACTGTAGTGTAAATGGAGTTCATTTTATGCTCCTCAAGAGGCGCACTAGCAACTGAAGCTAGAGGCTGTGGTCTTTAGAGTCCCTGTTAGTGTGCCCGCCTTCCATGCCTGAAATGCCGGTTCAAATCCCGCTGGGAGCGGTGCGTGTAGAACCGGGAGGGGTTTAATTGGTGCCATGACCCGGATGGGAGTGAGGTTTAGGGGGTGAGTGTAATGGGGGTCAGATAGTAAAGAGCTTTGCAAGTAAAACCTCACTTCCCTGTCCTCAAGAGGCACACTAGTGATTGACGTTAGAGGCTGTGGCGTCCTAGTTAGTGTGCCTGCCTCCCAGTGCCGGAAACGCTGGTTCGAATCCCGCTTGGAGCGGTGCGTATAGAACCGGAGGGATTACATTGGTGCCGTGACCCAGATGGGGAGTGAGGTTTAGGGGGGTGAGTGCAATGGAGGCCAGCTAGTAAAGAGCCGTGCAAGTAAAACCTCACTCCCTTGGCCTCAAGAGGCACACTAGCAACTGATTCTAGAGGCTGTGGTCTTTAGCGTCCTTGTTAACGTGCCTGCCTCCTTTGCCACAAATGCTGGTTCGAATACCACTCGGAGCGGTGCATGTAGAACCTGGAGGGGTTTAATTGGTGCCGTGACCCGGATGGGAGTGAGGTTTAGGGGGTGAGTGTAACAGAGGTCAGATAGTAAAGAGCTTTGCAAGTAAAACCTCTATCAACCTGGCCTCATAAGGCACACTAGCGACTGATGCTAGAGGCTGTGGTCTTTAACATCCTAGTTAGCGCGCCTGCCTCCCAGTGTTAGAAACAGTGGTTTGAATCCAGCTCGAAGAGGTGCGTATAGAACTGGAGGGATTACATTGGTGCTGTGACCTGGACGGGAGTGAGGTTTAGGGGGGTGAGTGTAACAGAGGCCAGCTAGTAAAGAGCTGTGCAAGTAAAACCTCACTCCCCTGGCCTCAAGAGGTGCACTAGTGACTGACACTAGAGGCTGCGATCTTTAGCGTCCTTGTTAGCTTGCCCGTCTCCCATGCCTGTAAAGTGGTTTCAAATCCCGGAGCGGTGCGATTAGGACCAGTTACATAATGTCTTACAAGTGCAGAGCTGACCAACTCTTACTGACTAAACTATGAAAATCAATATTCAATGAGCAATAATTTTTAAAGGTCTATCTTAATTTGAAACAGCAACACATTCGGTACACCGCAAGCATTTGTAGCAACATGGTGCCTCATTTAACGTTTATCTCCGTTTACTTTGATCACATAAACTGAGGTGCAAATTATAGGATCCAATTCAATTAAATACAGAACAACAATCAATGTTCAGGAGGAGCAGCTCTTGACTCACTGCCAGCCAATGGTTTCTGCCACGCGCTGACTAAAACTGACAGTGTGTGAGGAGCCGCGGTCCCTTCTGCTTAAAAATGCACACACAGTTGTTTTTACAAGATGACTACGCTGATGAAGGATTCTGGGCCGTCCGACCCAAATCACTGCACACTGATATTAAGCATTCGCTGTATGAACTAATTAGAGCACCATTAGCACCCGCCCTTCCTTTTCTCTCTTATTACATTATCAGTTGTGCAGCAAGAGCTTGAGGCAAAAAAAAGAGAAAGAAACATAAGAAAGAAGAAAAACATGCATTAATCATCTATGCTGAAAACCAGGTTGGACTATGGAAATATGCAAATTTAGAATATTGTTTTTTTTCCGTGAGTGTTAACTAACACTTTCTGGCTTTCTAGTTAAGATGAAGTTTCCTTCTGTTAAGCACATATGTTTAAACCTTGCTCAATATAAAGAAATGATTGCAAAAAACGAATTACTATAAATGCGCAAGATGTGCTGTGAGAAACTAAACTAAAATGGTAATTTCAGATCCATTACATAGATGTTCTTTGCCAAGGAATCCACAATATATCGGTTATCAGCCACATTTGACATTTCTTTTTTAAATTTATTTGTCGATATAGGATATTTAAAGGATTAGTTCACTTTGAAATGAAAATTACCCTCAAGCCATCCTAGGTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU547940 lncRNA upstream 11447 537654 ~ 538075 (+) True G477495
TU547932 lncRNA upstream 22626 523714 ~ 526896 (+) True G477489
TU547969 lncRNA upstream 143241 405053 ~ 406281 (+) True G477523
TU547875 lncRNA upstream 156396 327884 ~ 393126 (+) False G477441
TU547873 lncRNA upstream 156396 329290 ~ 393126 (+) True G477441
TU547950 lncRNA downstream 615 555248 ~ 612384 (+) True G477505
TU548039 lncRNA downstream 67331 621964 ~ 622163 (+) True G477588
TU548040 lncRNA downstream 68107 622740 ~ 623214 (+) True G477589
TU547942 lncRNA downstream 70165 624798 ~ 627290 (+) True G477497
TU548056 lncRNA downstream 162465 717098 ~ 803072 (+) True G477605
CI01000335_00526951_00528066.mRNA mRNA upstream 19864 526951 ~ 529658 (+) False CI01000335_00526951_00528066
CI01000335_00489106_00492720.mRNA mRNA upstream 56549 488688 ~ 492973 (+) True CI01000335_00489106_00492720
CI01000335_00286459_00296460.mRNA mRNA upstream 252266 284727 ~ 297256 (+) True CI01000335_00286459_00296460
CI01000335_00193513_00197704.mRNA mRNA upstream 351758 191873 ~ 197764 (+) False CI01000335_00193513_00197704
CI01000335_00149953_00163006.mRNA mRNA upstream 385983 149953 ~ 163539 (+) True CI01000335_00149953_00163006
CI01000335_00586957_00597421.mRNA mRNA downstream 32324 586957 ~ 598108 (+) True CI01000335_00586957_00597421
CI01000335_00681430_00741137.mRNA mRNA downstream 126797 681430 ~ 741222 (+) True CI01000335_00681430_00741137
CI01000335_00884515_00888701.mRNA mRNA downstream 329705 884338 ~ 888831 (+) True CI01000335_00884515_00888701
CI01000335_00930276_00934328.mRNA mRNA downstream 375643 930276 ~ 936380 (+) True CI01000335_00930276_00934328
CI01000335_00988268_00990978.mRNA mRNA downstream 433635 988268 ~ 991337 (+) True CI01000335_00988268_00990978

Expression Profile