RNA id: TU547950


Basic Information

Item Value
RNA id TU547950
length 7224
lncRNA type sense_over
GC content 0.39
exon number 2
gene id G477505
representative True

Chromosome Information

Item Value
chromosome id CI01000335
NCBI id null
chromosome length 1176510
location 555248 ~ 612384 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCATATACACCTAGGATGGCTTGAGGGTGAGTAAAGCTTGGGCTAATTTTCATTTCAAAGTGAACTAATCCTTTAACTGTGCATGATCATTTGTTAGTTTTTTCACTTTCTTAAAGTTCATTTTTACACTAATAATTTAAAAACACTCTTAAAGTTCCCCTGCTGTTTTAAAGGTTGCTAATTTTGTTTTGGAGGTCTCCTTCACATTTACATGTGTCCAAGGTCAATTTTTTTTTTTTTTAATTTTCTCATAATATACACTGCACATCACCTCATTTCTCATAGTGTCTGAAAACGGTTCATTCAAAGATTCATTCGCTCTAAACCCCTCCTTTCCGAGAGCCTGCTCTGCTCTGATTGGTCAGATAGCTCAGTCTGTTGTGATTGGTCTACCACTTAAAGTGCGTAATGAAACAAAATGCCTTTTACCATATCTGAATTTCAGCTGTGACATTCGTGACATTGTTACGCAGGTATGTAACAGGAAATGACACTGGAATGGCTGACGACTCGTTTCAGCAGTTCAAGAATCAATTCTTTTAGAACACTAACTTTATTTGTCATGTACTTTGATCTTTTGAAATTTTGAAAAGACATTGTGTCATTTAAGGTGCTTTTAACTAATATTAGGGTGTGATTGTTGCACTTTCATGGGTCAAACACAAGAGTCTGCATGCACAGTTTAAAGCCTCACTGCTTCTGTTTCATGTAATTGTACATTCTGAACGATGTTCTGTTTTTGGCACAGCGCGCACACTGTAAATAGCACCGGGAGCTTGTGCGGTGTAAGCCAGGCGCTTTGTTTTGCCAGGGTTTTGATAAAGAGAGTCTCTCAGCACTGATCAGAGGAAGCTTTGTTGACGAGTCTTTGGCAGTTTATAATCACACATGACATGAATCTTTATGAACACACCACTGTTTTTTAAAAGGGAGGATAGGCACCTACTAAGGGCACCTTCGACAACAACCAACCATAAGAGTCTAAAGGAATAGAAACACATTATATCCACAGACCATACAAGCATCATCTTTGCCTCTGACCTATTTGTTTTGCACGCAACGGAAAACAACATTGCAGCTTCTTACATAAGAGTATAATTATAGTCACTGTTGGTGGTTTGCGATTGGATTGGTGCACATGCTAAAACAAGGAACGTTGGAGGCGCTACATACTTGCATGTTGTTTACTTCCTGACAAACATTTTTTTTTTGGCTTGATATTGTTGTTTACTCAGACAGTAATGTTTTAAAATGGGAATACATCAAGCTTTTATCACATTTGATTAGAATGATTTCCTAAGGCACACATTGACACACTTAGTTCCATGAACTGGTGGGTGCAAAATTGTTCCAAGAAAACATAATGAATGTGTATTTTCCTCTACTTCAAATCACAAAGTGCTATTTGGCACCATTTGAGAGAATCACATATAGCTGAGAAACAAAGTCAACTGGCATTTAAAGAAAGAAACTTTCTTTGAAACATTTTCATACTTATTTGCTTTGTGGTGATTGAAAGAATGAGACAAAAGCTCTTCATATCTTTCAAAGCATCAAAAGGCCTTCAAAATGTCTCTCTGCTACTATACAGAGAATATAGCATTTTTTAAAAAACTGTTTTTCTTTATGACTCCCACTACTGTTCATTTGATGGGCAATGAAGACAAAACAAAAAATTAATTGATTTGTAATTTATTATATTTTTTTCCTCCTTGTGTGGAAGCTAACTGACATTAGAGGTCTTTGAACAAAATAAAATGTCATTAAATGATTGATTTTAGCTGTTGTATATGTCAAAACTCATATGCAAATGTCTGTTTTGCATCTCAAATGCGTTCATCAGACATCATCTCCTATTAAGAAAAGATTTGTACATTTTGCAAGACAGCATACCAGTCAAAACTGTCATGCATAATTCATCACATTTTCCATATCGGAGCATGTGAATGTCTTGTAGTGTCAGTCTGTTTGTACTGAAAAGATGTGAAGTCCGAGTTAAAGGAAGTCACTTTTGAATATATGGTGTCCTGGAGGTGACTGCCTAGATTTCACTGAGGAACTAGAGACGTTTTATGTGGAACTGCATCCATCCATCATGGAAAACAGGTAATGGAATGAGAGCTGATCGTGTATGAATGAGAGGCAGTAGGCATGGAGTAGGTGTGCAGATGCATCATGCTGGGCGGCTGAAATAACACTGCGTTACACCACCACCGTATCCTAAAATACCTTTTAAGATCTTATTCATCTCAATAATTAGTGCCCCTGCAGTGTGATCATTTTCCATTCACATTCTCCATATGGTGTGCAACTCATCTATAATCTGAGAATGTGATGTTAAATTCAACATGAATCAGCATTCACAACCTGTTTCACTGTAATGTGACATATTTCAAAGTGAAACATGAATGAAAAAAAAGGGCAGCTAACTGGACCATTGTAACTAGCCAAGAGGGATGGGATTGAATTAAACAATTTAAATTCTGGATTCTTAACAGTTCCACTAATGGTTCTTTTAGTAATTTTAAGGAATAAATATTTGGAAGAAAAGTCAAAGATCATTCAAAAAATTAATAATTTTAAAACATCTCACTCGCCGACGTTTTAAAAAGCCTATTATGCAATTTTAAAGTTGTAAGCTGATTGATTCACTAACAAGAATGATTCATGTTCAGGAATCGGTTTCAATCTGTTTGGAATTCTGTTTCGAGATGTAGATTTAGAAAAGGTGTTGCAGCGCCGCTGAATAGTAGGGCATTTTAGAGTATTTTAGTATGGGATTCTGTTCGGAGCGGCAGATGAATGCACTTGTGAAACAAGTTAAAGGGATAGTTCACCCCAAAATGAAAATTCTGTCATTAATTACTCACCCTCATGTCGTTTCAAACCTGTAAGACTTTCGTTCATCTTCAGAACACAAATGAAGATCTTTTTGATGAAATCTGAGAGCTTGCTGTCACTCCATAGACAGCTACGCAACTGACGCTTTTATGCTTCAAAAAGTTCACAAAGAGATCGTAAAACTAATCCATATGAACTGAGCGGTTTAGTCCAAATTTTCTGAAGAGACTCTATCGCTTTATATGATGAACATATTGAATTTAGGCTTTTATTCACATATGAACATTCATAAACTCACACATCAGTTGTGTAAACAGAAGCTCAAGCATGTTTGTGAGAACCTTTGAGGTTCATTATGTTACGCAACACATTTGAGCTTCAGCAAGGTTTGTTCTCGCATGTCAAGCAGGTTTGGTTGAGTTACTGTTTGTGTTTGCTGATCAATGTTTATATGAGAATATGTTCATCATAAAAAGCGATCAAGAAAATTTGGAGTAAACCACTAAATACATATTCAAGCGTCAAAGTGTCAGTTGCGTAGCTGTCTATGGAGGGACAGAAATCACTCAGAATTCATCAAAAAGATCTTCATTTGTGTTCCGAAGATGAACAGAAGTCTTACGGCATTGGAAGGACATGAGGATGAGTAATTAATGACAGAATTTTCATTTTTGGGTGAACTGTCCCTTTAACAGGACCGAACCTCATTCACAATGATGAATAGTTCACAAGACCAAGAGCATGTATAAAGCAAGAAAATTGGGTCCATTTTACTTTCATGTTGTCTTTAAAAAAGAACTACAAAGACGATACATGCAAGGCTCGTATTTGTAATAATATTTCATCCACAGTAAAAAAAAGTTTACACAAAGGATAGTTACTTAATCTAAAATAAAACAAGCTTCTTTGGAGGCTCAACTTAAGAAACAAGCTAGGAACATTTGCAAATGAGTAAGAAAAATGTCTTCAATCTCTTCAGGCATCATCTACACTGGGCTCACTTTTTACATATTAAAACAGCCATTTCTAAACATTCACAGCAGTATAATATAAGAGGATTTGTTGAGCTGTATCCCTGATATACAAATTTTGCATGCATATTTGTAATGTTTTATCCATTTTCTTGTTGATATTTGTGCCAACCCCTGCACGCTCCACTACGGGAGGTCGTGTGATTAAAGGTGTTTATCAGCTGGAGAGGACAGTTTGCCAGCCAGCCATGGTGCATCCTAAGATCCATCATTCAGAGCGGAGTTCAAGAGCGCTGCTGATCCACCCCGCAGGCAGCGACGTCGGCGAGTGAGGTTGACACAGCATGGCACACCTGTTTCACTGATCTGCTTCAAAATCAACAAATGACTGGCTGCCAAAGAGAGCGCTATTCCCCCATGACGGGAAGACTGGAGGCCAGCTCTACCGAGGTACTAATATTTCAAACTAATGAGGTTCTGCGCTACTCGTAATTATACTTTATATTCTAAAGCAGCTTCTGTTGCCCTGGGTCTTTCATAGGATTGCACTGCTAAGATGCGATTTGTAATGCGATCTGATTAAAGAGAATCCTTATTATGCACATTCTTTGAAATATATTTAGCTGCAGGAAAGCTGCCTACTATCTGTCTATCCCACCCATCCATCTATCTGTCTATCCATCCGTCCGTCGTCCTTCCGTCCATCCATCCATCCGTCCGTCCATCTTAGTGTTGTCAAAATTACTGACTTCGATACCAAGTCGATACTGAAATTTTAAAAATGTGACACTTTGAGCACTATTAAGCGGATTCGTAAACACCTCTGATTGGTCATTGTGTTCATGCACTCAACAGATATGTCTGTGATTGGCTATAATGATCAACGTTTTAAAAACATGTTGTAAATAGACATCAGTGACGCTCTTCACCGAGCGCTTACACAGATACACACAGCAGCGTTTGAAAGTAGGCGTCTATCAGCGGACATGTCCACTGATAGACGCCTGCTTTCAACCGGTCCCACTTTCAAATTCAAACACTTCTGTGTGCTTTCAAACGCTCCCGTGCGTTGATCATTATAGCCAGTCTAACAGCTGGGGGCTCGTCCGGGATGTTCCCAAGAAACACGGGACTGACAGGTCATCCTCCATCACAGGTAAGTTGTTTTTAATGATTTCCTGTGGTGGTAGGATTGATTGATATCACAATAGGTAGTGTTATCCTTGGATGGAGCTCTGAGAGAGTTAGTCCATGAAGATTTGTCTGTACGGGTACTGTTTAAACGGCCAATCAGAGGTGTTTACGAATTCGCTCAACAGCGCTCAAAGCATCACATCTATCTATCTATCCATAAAGCCTATAAATCATTAAACTTTATGACTTTGGTTTCTATCTGGTGTAATCTGCTCATTAGCTGCCCCCATGTTACATAAACCAGGTGGTTTCTCATGAGCTGGACCAACTAAGGACCAGCTTAGGACAGCTTATCTGGTTGACTAGACATCCTGTTCCAAAAACCTAACAAAAGTTGGCTGACTAGCTGTTAGGATCCTGGAGCAACTTTAGACCAGCTAGAAACCAATAACTAAACTATCAGCATAAGATGGATTTTAATGAAGGGGATGGCTGACTCAACATAAAAAACTAGGACATATCTATCTACCTATAACTATCATATCCTGATATTTCATGCCATTGTCTGCTGTATTCAGCCCAACTGTGATCCTCACTATGTCATACATGCACACACACATCTTACTGACACACATTCGATGTGTCTCTACGGGAGCTCATGTGTCTATTTGTTGTTCTACAATCACAGTACTGCTTGTCAGCACACACTCTCATATTAACTCCAAAAGCTGTTGGAAAGCCGCCCCCTGCCAAATGACAGCTGCTTCCCCTGGAGCGTCTGCATTTGCCCCCGCTAGCATTGCCTGCCTGGAGCCAGGTAGCAGCCAAACGGGAGCGCAAACCCTGATCACATGGTTATGTCACTCGCTACCTCAAGCTCAGTATCTGTACTTGCTAGTTCTTTCTCTTTCTGCATCATTGCAATGCAAGAGGCATTTCATTTCTCTGATAGAATGCTAACACCAAAGGTTCAAAGGGCAATGTGACATTAGGCTTTTATGGAATGTGTGGGCGGCCATGCCCAGAATCCTTCTCACCATGTCACCATTTTTCTTAATGTCTGCCACAACATATATTGCTGATATTTCATATTATATTTCATATAGCAACTTCCAGGAACCTATTAACATATGTTAACATATTTCATCCACTTTTATAATATATACTACTGACAAATTCATAATCTTTAACTACATGTTGTCACATGAACAATCAGTCAGTAACTACACTGATTTAAGTACCAGTTAGTTGTAAGCTGATTGATTCACTAACAAGAATGATTCATGTTTGAGAATCGGATTACTCTGATTGCCCTGTGTTGATTCACTAAAGAAACTGGCTCAAAGGAGTCCTTCATTTATGTCTTTTATTACTCACCCTCATGTCGTTCCACACCTGTAAGGCCTTTGTTCATCTTCGGAACACAAATTAAGATATTTTTGATTAAATGCGATGGCTCAGTGAGGCCTGCATTCACAGCAATGACATTTCCTCTCTCAAGATCCATAAAGGTACTAAAAACATATTTAAAACAGTTCATGCGAGTTCAGTAGTTCTACCTTAATATTATAAAGCGACGAGAATACGTTTTGTGCGCCAAAAAAGCCCCAAAATAACGACTTTTCAACAATATCTCGTGATGCCCGATTTCAAAACACAGCTTTACGATTCTTTTGTTTCGAATCAGTGACTCGGATCTCCTATCAAATGGCTAAACTGCTGAAATCACGTGACTTTGGCACTCGGAATCACTGATTCGATTCGTAAAGCTCCGAAGCAGTGTTTTGAAATCGGCCATCACGAAATCGGCCATCTTTTTTTTTTTTTTTTTTTGGTGCACAAAAAGTATTCTCGTCACTTTATAATAATATAATTAAGATAGAACCACTGAAGTCACATGAACTGTTTTAAATATGTTTTTAGTACCTTTATGGATCTTGAGATTTTCAGTGGCATTGCTGTCTGTAGAGGCCTTTCTAAAAATAAAATGCAGTCCATTTCTTGTTAGAAAGAGTTTTTGGTGTATCGAACACTCATTTATGACCCTGAAGTGTAGGACACGGGTATCTCTGGAGCGGCAGCGCTCTTGACCTTCACTGCGGTTTTACAGCAGCACCCAAATGGCTCCATTGGGTGTCATTTCTAATAACCACCCTCTCTCCCCACTTCAGCCCACTCTCGTCCCGATACCACAGCTCAATGGACTCATTGAGTCAATTACACCGAGCACAGCCACAGTTAGAGTGCTTTGTGATACAGCTAAGTGAGTGCGGCTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU547940 lncRNA upstream 17173 537654 ~ 538075 (+) True G477495
TU547932 lncRNA upstream 28352 523714 ~ 526896 (+) True G477489
TU547969 lncRNA upstream 148967 405053 ~ 406281 (+) True G477523
TU547875 lncRNA upstream 162122 327884 ~ 393126 (+) False G477441
TU547873 lncRNA upstream 162122 329290 ~ 393126 (+) True G477441
TU548039 lncRNA downstream 9580 621964 ~ 622163 (+) True G477588
TU548040 lncRNA downstream 10356 622740 ~ 623214 (+) True G477589
TU547942 lncRNA downstream 12414 624798 ~ 627290 (+) True G477497
TU548056 lncRNA downstream 104714 717098 ~ 803072 (+) True G477605
TU548088 lncRNA downstream 205763 818147 ~ 818353 (+) True G477636
CI01000335_00526951_00528066.mRNA mRNA upstream 25590 526951 ~ 529658 (+) False CI01000335_00526951_00528066
CI01000335_00489106_00492720.mRNA mRNA upstream 62275 488688 ~ 492973 (+) True CI01000335_00489106_00492720
CI01000335_00286459_00296460.mRNA mRNA upstream 257992 284727 ~ 297256 (+) True CI01000335_00286459_00296460
CI01000335_00193513_00197704.mRNA mRNA upstream 357484 191873 ~ 197764 (+) False CI01000335_00193513_00197704
CI01000335_00149953_00163006.mRNA mRNA upstream 391709 149953 ~ 163539 (+) True CI01000335_00149953_00163006
CI01000335_00681430_00741137.mRNA mRNA downstream 69046 681430 ~ 741222 (+) True CI01000335_00681430_00741137
CI01000335_00884515_00888701.mRNA mRNA downstream 271954 884338 ~ 888831 (+) True CI01000335_00884515_00888701
CI01000335_00930276_00934328.mRNA mRNA downstream 317892 930276 ~ 936380 (+) True CI01000335_00930276_00934328
CI01000335_00988268_00990978.mRNA mRNA downstream 375884 988268 ~ 991337 (+) True CI01000335_00988268_00990978
CI01000335_01029328_01043603.mRNA mRNA downstream 416944 1029328 ~ 1043603 (+) True CI01000335_01029328_01043603
TU547947 other upstream 615 549522 ~ 554633 (+) True G477502

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00053370 True 479 lncRNA 0.51 3 NC_007115.7 6678443 ~ 6692416 (+)
eurasian perch (Perca fluviatilis) TU37640 False 1359 lncRNA 0.42 4 NC_053114.1 18542458 ~ 18558219 (-)
tiger barb (Puntius tetrazona) TU37640 True 224 lncRNA 0.55 1 NC_056702.1 2405174 ~ 2405397 (+)