RNA id: TU548056


Basic Information

Item Value
RNA id TU548056
length 825
lncRNA type read_through
GC content 0.40
exon number 2
gene id G477605
representative True

Chromosome Information

Item Value
chromosome id CI01000335
NCBI id null
chromosome length 1176510
location 717098 ~ 803072 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAGAAAGTGAACAAAAAAATGCTAACAATCAAAAAAAAAGAAAAAAAAAGAAAAGAAAAACCTTACCGTCTACAAGCTGCGTGACTGTCATGTTTGCGTGCCATACTGATGGGACCAAACCAAAGACGGTACACAGATTTCTAAACAATTTTTTCTTTTATGATATGGCAAAAAGTGTTGATTTTTCAAGGGGTGGTTGTTTATGATTTCACATTTTTAACTTTAGTTAGTGTGTAATGTTGCTGTTTGACAACATCTGCAAAGTTACGACACTCAAAGTTCAATGCAAAGAGAGATTTTCTTTTAAAGAATTCTCTGTTTAAGGACTACAACAAATGGCTGGTAGGGACTTCAACAAGCTTCTTCCTGGGTTAGTGACGTCACTAACCCTAAAATTTACATAAACCCTGCGCCTGAGAACATGCAACAAAGGGGGTGAGGCCATTTCGGGCTGCTTTAGAGAAGAGGAAGAGTTGTTGTAGTAGAGTGTCGTTGCCTTGCTGTCATTTTACAGCTGACTGCTTCACAAACGAGGGTCAATTCAACGTTGGATTTGCACAAAAGATTAACATGACGGCACATGCTAGTTGATGAGTTGAATCAACTCCACAGCAACTACATAAATTTATCCACTAACCATTCAGAAACGTCCAGATGCATTCTAAAAGTTGTAACTTCTTCCTGAGTCTCTCCATCAGTGTGCAACTCAGGTTTGAACAATGTAAGGCTGAACACCGTTACTGACAATCCTCATTTTGGCTGCGTGAGATTCTCCGGCTTTGTTGTTGTTGAGCAACCGAAGCATAAGCTGTTAAAGCTCCGCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU547942 lncRNA upstream 89808 624798 ~ 627290 (+) True G477497
TU548040 lncRNA upstream 93884 622740 ~ 623214 (+) True G477589
TU548039 lncRNA upstream 94935 621964 ~ 622163 (+) True G477588
TU547950 lncRNA upstream 104714 555248 ~ 612384 (+) True G477505
TU547940 lncRNA upstream 179023 537654 ~ 538075 (+) True G477495
TU548088 lncRNA downstream 15075 818147 ~ 818353 (+) True G477636
TU548103 lncRNA downstream 57431 860503 ~ 860797 (+) True G477651
TU547956 lncRNA downstream 60621 863693 ~ 881031 (+) True G477511
TU548115 lncRNA downstream 87777 890849 ~ 891075 (+) True G477660
TU548123 lncRNA downstream 100851 903923 ~ 904142 (+) True G477668
CI01000335_00586957_00597421.mRNA mRNA upstream 118990 586957 ~ 598108 (+) True CI01000335_00586957_00597421
CI01000335_00526951_00528066.mRNA mRNA upstream 187440 526951 ~ 529658 (+) False CI01000335_00526951_00528066
CI01000335_00489106_00492720.mRNA mRNA upstream 224125 488688 ~ 492973 (+) True CI01000335_00489106_00492720
CI01000335_00286459_00296460.mRNA mRNA upstream 419842 284727 ~ 297256 (+) True CI01000335_00286459_00296460
CI01000335_00193513_00197704.mRNA mRNA upstream 519334 191873 ~ 197764 (+) False CI01000335_00193513_00197704
CI01000335_00884515_00888701.mRNA mRNA downstream 81266 884338 ~ 888831 (+) True CI01000335_00884515_00888701
CI01000335_00930276_00934328.mRNA mRNA downstream 127204 930276 ~ 936380 (+) True CI01000335_00930276_00934328
CI01000335_00988268_00990978.mRNA mRNA downstream 185196 988268 ~ 991337 (+) True CI01000335_00988268_00990978
CI01000335_01029328_01043603.mRNA mRNA downstream 226256 1029328 ~ 1043603 (+) True CI01000335_01029328_01043603
CI01000335_01055918_01061590.mRNA mRNA downstream 252846 1055918 ~ 1061716 (+) True CI01000335_01055918_01061590
TU547947 other upstream 162465 549522 ~ 554633 (+) True G477502

Expression Profile