RNA id: TU548103


Basic Information

Item Value
RNA id TU548103
length 295
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G477651
representative True

Chromosome Information

Item Value
chromosome id CI01000335
NCBI id null
chromosome length 1176510
location 860503 ~ 860797 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CATAAAGTGCATTGTTTCAAATGATAGTACATAGTAGTTAAAGACGCTTAATAGGCTATAAAGTGGGACCTAATATTTTCTTTTCTATTTTTTTTTTTTTTCACTATAGAAATGACAATTTGCTTAATTGTCATGAAAATGTAAAATATAATTTCTTTATTTAGGGTGAACGATGACCCTGCCATTTCCTTGTGAAATTCATTCTAGGTAAACACACGCTAGTGTAAGAAGAAAGCGAGTGAGAGACAATGTGTACAGTCATGCCATGATAGCCATTTGGAGAAATGTGCCTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU548088 lncRNA upstream 42150 818147 ~ 818353 (+) True G477636
TU548056 lncRNA upstream 57431 717098 ~ 803072 (+) True G477605
TU547942 lncRNA upstream 233213 624798 ~ 627290 (+) True G477497
TU548040 lncRNA upstream 237289 622740 ~ 623214 (+) True G477589
TU548039 lncRNA upstream 238340 621964 ~ 622163 (+) True G477588
TU547956 lncRNA downstream 2896 863693 ~ 881031 (+) True G477511
TU548115 lncRNA downstream 30052 890849 ~ 891075 (+) True G477660
TU548123 lncRNA downstream 43126 903923 ~ 904142 (+) True G477668
TU548124 lncRNA downstream 43431 904228 ~ 904453 (+) True G477669
TU548134 lncRNA downstream 51389 912186 ~ 912406 (+) True G477679
CI01000335_00681430_00741137.mRNA mRNA upstream 119281 681430 ~ 741222 (+) True CI01000335_00681430_00741137
CI01000335_00586957_00597421.mRNA mRNA upstream 262395 586957 ~ 598108 (+) True CI01000335_00586957_00597421
CI01000335_00526951_00528066.mRNA mRNA upstream 330845 526951 ~ 529658 (+) False CI01000335_00526951_00528066
CI01000335_00489106_00492720.mRNA mRNA upstream 367530 488688 ~ 492973 (+) True CI01000335_00489106_00492720
CI01000335_00286459_00296460.mRNA mRNA upstream 563247 284727 ~ 297256 (+) True CI01000335_00286459_00296460
CI01000335_00884515_00888701.mRNA mRNA downstream 23541 884338 ~ 888831 (+) True CI01000335_00884515_00888701
CI01000335_00930276_00934328.mRNA mRNA downstream 69479 930276 ~ 936380 (+) True CI01000335_00930276_00934328
CI01000335_00988268_00990978.mRNA mRNA downstream 127471 988268 ~ 991337 (+) True CI01000335_00988268_00990978
CI01000335_01029328_01043603.mRNA mRNA downstream 168531 1029328 ~ 1043603 (+) True CI01000335_01029328_01043603
CI01000335_01055918_01061590.mRNA mRNA downstream 195121 1055918 ~ 1061716 (+) True CI01000335_01055918_01061590
TU547947 other upstream 305870 549522 ~ 554633 (+) True G477502

Expression Profile