RNA id: TU548123


Basic Information

Item Value
RNA id TU548123
length 220
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G477668
representative True

Chromosome Information

Item Value
chromosome id CI01000335
NCBI id null
chromosome length 1176510
location 903923 ~ 904142 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATAAGTTCAAAACTGCCATCTTCTGACAAAGCGTAGGAATTCATTCAGCACGACCCTCACAGTGCATTATGGGTATTCTGATGTTTGAGTGTACATCAGTTGTAAACTCGTTATTGCGGTGCATTATGGGATTGAATGCATGCACTCGATAAGGTTTACTATGGTAAATGACTGTCCCTTCAAATAGTGCCCTATTTAAGGTTATAGGGGGTGATTTTGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU548115 lncRNA upstream 12848 890849 ~ 891075 (+) True G477660
TU547956 lncRNA upstream 22892 863693 ~ 881031 (+) True G477511
TU548103 lncRNA upstream 43126 860503 ~ 860797 (+) True G477651
TU548088 lncRNA upstream 85570 818147 ~ 818353 (+) True G477636
TU548056 lncRNA upstream 100851 717098 ~ 803072 (+) True G477605
TU548124 lncRNA downstream 86 904228 ~ 904453 (+) True G477669
TU548134 lncRNA downstream 8044 912186 ~ 912406 (+) True G477679
TU548136 lncRNA downstream 10936 915078 ~ 955515 (+) True G477681
TU548157 lncRNA downstream 56097 960239 ~ 960575 (+) True G477702
TU548158 lncRNA downstream 56552 960694 ~ 960936 (+) True G477703
CI01000335_00884515_00888701.mRNA mRNA upstream 15092 884338 ~ 888831 (+) True CI01000335_00884515_00888701
CI01000335_00681430_00741137.mRNA mRNA upstream 162701 681430 ~ 741222 (+) True CI01000335_00681430_00741137
CI01000335_00586957_00597421.mRNA mRNA upstream 305815 586957 ~ 598108 (+) True CI01000335_00586957_00597421
CI01000335_00526951_00528066.mRNA mRNA upstream 374265 526951 ~ 529658 (+) False CI01000335_00526951_00528066
CI01000335_00489106_00492720.mRNA mRNA upstream 410950 488688 ~ 492973 (+) True CI01000335_00489106_00492720
CI01000335_00930276_00934328.mRNA mRNA downstream 26134 930276 ~ 936380 (+) True CI01000335_00930276_00934328
CI01000335_00988268_00990978.mRNA mRNA downstream 84126 988268 ~ 991337 (+) True CI01000335_00988268_00990978
CI01000335_01029328_01043603.mRNA mRNA downstream 125186 1029328 ~ 1043603 (+) True CI01000335_01029328_01043603
CI01000335_01055918_01061590.mRNA mRNA downstream 151776 1055918 ~ 1061716 (+) True CI01000335_01055918_01061590
CI01000335_01109924_01114152.mRNA mRNA downstream 205782 1109924 ~ 1114152 (+) True CI01000335_01109924_01114152
TU547947 other upstream 349290 549522 ~ 554633 (+) True G477502

Expression Profile