RNA id: TU548134


Basic Information

Item Value
RNA id TU548134
length 221
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G477679
representative True

Chromosome Information

Item Value
chromosome id CI01000335
NCBI id null
chromosome length 1176510
location 912186 ~ 912406 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCAGATTTCAAGTTCCCAGCATGCTTTGCGTCACACTCTGTAAGGGGGAATAAATGTTGGAATTGAGTGTTATTTTGTGTGTTTTTGCACAAGATTAATACAGGGGAAGATATTATTGTTTAATGTTCTGTTATTTTGGTATGTAAATGTGTTTCTGTGATGTTGAAGTTTTGTAGAGTTACCATCATGGTGAAGAGTAGTGCCTGTGGATAGGTTGAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU548124 lncRNA upstream 7733 904228 ~ 904453 (+) True G477669
TU548123 lncRNA upstream 8044 903923 ~ 904142 (+) True G477668
TU548115 lncRNA upstream 21111 890849 ~ 891075 (+) True G477660
TU547956 lncRNA upstream 31155 863693 ~ 881031 (+) True G477511
TU548103 lncRNA upstream 51389 860503 ~ 860797 (+) True G477651
TU548136 lncRNA downstream 2672 915078 ~ 955515 (+) True G477681
TU548157 lncRNA downstream 47833 960239 ~ 960575 (+) True G477702
TU548158 lncRNA downstream 48288 960694 ~ 960936 (+) True G477703
TU548163 lncRNA downstream 54318 966724 ~ 967136 (+) True G477706
TU548171 lncRNA downstream 61511 973917 ~ 974202 (+) True G477711
CI01000335_00884515_00888701.mRNA mRNA upstream 23355 884338 ~ 888831 (+) True CI01000335_00884515_00888701
CI01000335_00681430_00741137.mRNA mRNA upstream 170964 681430 ~ 741222 (+) True CI01000335_00681430_00741137
CI01000335_00586957_00597421.mRNA mRNA upstream 314078 586957 ~ 598108 (+) True CI01000335_00586957_00597421
CI01000335_00526951_00528066.mRNA mRNA upstream 382528 526951 ~ 529658 (+) False CI01000335_00526951_00528066
CI01000335_00489106_00492720.mRNA mRNA upstream 419213 488688 ~ 492973 (+) True CI01000335_00489106_00492720
CI01000335_00930276_00934328.mRNA mRNA downstream 17870 930276 ~ 936380 (+) True CI01000335_00930276_00934328
CI01000335_00988268_00990978.mRNA mRNA downstream 75862 988268 ~ 991337 (+) True CI01000335_00988268_00990978
CI01000335_01029328_01043603.mRNA mRNA downstream 116922 1029328 ~ 1043603 (+) True CI01000335_01029328_01043603
CI01000335_01055918_01061590.mRNA mRNA downstream 143512 1055918 ~ 1061716 (+) True CI01000335_01055918_01061590
CI01000335_01109924_01114152.mRNA mRNA downstream 197518 1109924 ~ 1114152 (+) True CI01000335_01109924_01114152
TU547947 other upstream 357553 549522 ~ 554633 (+) True G477502

Expression Profile