RNA id: TU548158


Basic Information

Item Value
RNA id TU548158
length 243
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G477703
representative True

Chromosome Information

Item Value
chromosome id CI01000335
NCBI id null
chromosome length 1176510
location 960694 ~ 960936 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCGAAATAACAAGTTATGATGTCGAAATAACGACTTAATATGTCGACACAACGAGATATTATGTCAAAATAACGACTTAATATCTCGGAATAACGAGTTATTATATCAAAATAACGAGATATTATGTTGAAATAATGACTTAATATCTCGAAATAATGACTTATGTCGAAATAACAAGATAAGTTTTCTTTTTTTTTTTCCTTCCCACCATAACTTTTCTTCTTTTTTTCCACCATGCGGTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU548157 lncRNA upstream 119 960239 ~ 960575 (+) True G477702
TU548136 lncRNA upstream 5179 915078 ~ 955515 (+) True G477681
TU548134 lncRNA upstream 48288 912186 ~ 912406 (+) True G477679
TU548124 lncRNA upstream 56241 904228 ~ 904453 (+) True G477669
TU548123 lncRNA upstream 56552 903923 ~ 904142 (+) True G477668
TU548163 lncRNA downstream 5788 966724 ~ 967136 (+) True G477706
TU548171 lncRNA downstream 12981 973917 ~ 974202 (+) True G477711
TU548174 lncRNA downstream 110641 1071577 ~ 1074461 (+) False G477714
TU548175 lncRNA downstream 110641 1071577 ~ 1074461 (+) True G477714
TU547949 lncRNA downstream 115331 1076267 ~ 1078026 (+) True G477504
CI01000335_00930276_00934328.mRNA mRNA upstream 24314 930276 ~ 936380 (+) True CI01000335_00930276_00934328
CI01000335_00884515_00888701.mRNA mRNA upstream 71863 884338 ~ 888831 (+) True CI01000335_00884515_00888701
CI01000335_00681430_00741137.mRNA mRNA upstream 219472 681430 ~ 741222 (+) True CI01000335_00681430_00741137
CI01000335_00586957_00597421.mRNA mRNA upstream 362586 586957 ~ 598108 (+) True CI01000335_00586957_00597421
CI01000335_00526951_00528066.mRNA mRNA upstream 431036 526951 ~ 529658 (+) False CI01000335_00526951_00528066
CI01000335_00988268_00990978.mRNA mRNA downstream 27332 988268 ~ 991337 (+) True CI01000335_00988268_00990978
CI01000335_01029328_01043603.mRNA mRNA downstream 68392 1029328 ~ 1043603 (+) True CI01000335_01029328_01043603
CI01000335_01055918_01061590.mRNA mRNA downstream 94982 1055918 ~ 1061716 (+) True CI01000335_01055918_01061590
CI01000335_01109924_01114152.mRNA mRNA downstream 148988 1109924 ~ 1114152 (+) True CI01000335_01109924_01114152
TU547947 other upstream 406061 549522 ~ 554633 (+) True G477502

Expression Profile