RNA id: TU548174


Basic Information

Item Value
RNA id TU548174
length 571
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id G477714
representative False

Chromosome Information

Item Value
chromosome id CI01000335
NCBI id null
chromosome length 1176510
location 1071577 ~ 1074461 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCGGAGTGCAAAGTGCAAACGATGTCGAACCCGTAAAATGTGGGAGTTTAACATAGCATAAAACATAACAAACATAACGTTTAGCAATTAGCATAACTACAGGAAATGCTGTCATGCAGGGCCACCAACTCTCATTCAAACTCACTGTTTTCACGCCACACGTCCATTTTCTCACGCAGTGAAAGATACATAGCAGAGCAAAGAGGACACAAACAACACGCCGACAGATGAGACAGATCAGGCTCTCTTCATTGTGACGCTGCTCTCTAGTGACACACCTGGAATATGAACCATCAGCAGAATAAGGGATGTTTGGACACCCGGTCATCAGAAGCAGAGCTGTAGGAAGTGTGGACAGACATTGACTGTAATGATGGACTTTTGCTGATGGACAGGTAATTTATTTATTTATTTATTTATTTTTTGCAGCTAATTTAAAAATTTTCAGGCATAACCACTGCTGGACGTCGTGCCGGGATTAATGGGGGGACCCGACTCACCCCCGCCCCTTCATGCACACACCATTCACTCATATTGTGGAGATGTATGAAAGTAATTTAATAGCATCATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU548171 lncRNA upstream 97375 973917 ~ 974202 (+) True G477711
TU548163 lncRNA upstream 104441 966724 ~ 967136 (+) True G477706
TU548158 lncRNA upstream 110641 960694 ~ 960936 (+) True G477703
TU548157 lncRNA upstream 111002 960239 ~ 960575 (+) True G477702
TU548136 lncRNA upstream 116062 915078 ~ 955515 (+) True G477681
TU547949 lncRNA downstream 1806 1076267 ~ 1078026 (+) True G477504
TU547941 lncRNA downstream 7954 1082415 ~ 1083264 (+) True G477496
TU547962 lncRNA downstream 51542 1126003 ~ 1129011 (+) True G477517
CI01000335_01055918_01061590.mRNA mRNA upstream 9861 1055918 ~ 1061716 (+) True CI01000335_01055918_01061590
CI01000335_01029328_01043603.mRNA mRNA upstream 27974 1029328 ~ 1043603 (+) True CI01000335_01029328_01043603
CI01000335_00988268_00990978.mRNA mRNA upstream 80240 988268 ~ 991337 (+) True CI01000335_00988268_00990978
CI01000335_00930276_00934328.mRNA mRNA upstream 135197 930276 ~ 936380 (+) True CI01000335_00930276_00934328
CI01000335_00884515_00888701.mRNA mRNA upstream 182746 884338 ~ 888831 (+) True CI01000335_00884515_00888701
CI01000335_01109924_01114152.mRNA mRNA downstream 35463 1109924 ~ 1114152 (+) True CI01000335_01109924_01114152
TU547947 other upstream 516944 549522 ~ 554633 (+) True G477502

Expression Profile