RNA id: TU547949


Basic Information

Item Value
RNA id TU547949
length 1760
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G477504
representative True

Chromosome Information

Item Value
chromosome id CI01000335
NCBI id null
chromosome length 1176510
location 1076267 ~ 1078026 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCTCTCTATTGATGCCTCAGCACCAAAGAGCGTTTGTTTAACCACTTGTGCCACTGTGGCTTTCACATTGAGTGCTGGTGTTTGGGCCACTTTGTTAGATATAATGCCAACAATGTAACATAGGCAATAGTGGGATTTGAACCCACACCTCGATTGCAGTCTCATCATAAGAGAACATGCATTTAGCCACTTGTGCCACTGTGACTTTCACGCTGAGCTTTGGTGTCTGGGCCACTTTGTTGGATATAATCCCAACAATTTAATGATTGCAATAGTGAGATTCAAACCCATGTCTCTATCACAGTCTTGTCACCAAAGAGCATGTGTTTAACCACTTGTGCCACTGTGGCTTTTACATTGAGTTCTGGTGTTTGGGCCACTTTGTTAGATGTAATACCAACAATGTAACATAGGCAATAACAGGATTTGAACTCAGTTCTCCATGATTAACTCACAATGTTTTATCACCTGAGCCACTGAGTCTGGTTGGTCACTTACCTTTGAAATTAAGCTATAACATTAATTATATCAAGAACTTAAGTTAAGCAAAGGCAGAATCTGAACCAGGACACCATGTATAATCCACAAGCCTTTATGGCTTAAATCACTGAGCTTTATTTGGTCAGTTTGCTTTTGGAAATTTTAACATTTTCTGTCTTCAACATGGACAGTGTTGCCAATTTAGCAATTTTGTCACTAGATTTAGTGACTTCCCCACCCCTTTTGATACTTTTTTCAAAAGTTAGGGACAAATCTAACAACTTCTTGGACAAACCTTATCTAGATTCTTATTTTTCCCACTGATCTATATTCATATTTATATAGATCAATGAATTTGTCATTATGATGTAATTTATTGACATCCAGCTACCAGTTTTAGCTACTTTTAATTGAAAACAGTTGGCAACACTGAACATGGACAAATTAAAAGAGAGCAAAATAGTAACCTAAAATCTGTTAAATTAAAACCCAGGACAAAACACATTGTTTGAAGCAAGTCACAGGTAGTTCAAAGGAACACTGTTTCTCCACAAGGGTAACACTAAACAATATAGACCCACATAATCAACACTAAACAGAGCTTTAACCCATTTTAACTACAAATAACTATATCCATCTTTTTTTAATAAACATCAACCCATATTAACTACAAATGAATATATACATGTTTCATAAACATCTCAAATAGACAGCTAATTAAATATTCGTCTGCCACAGCCAATCAGAACTCACATTACCACATAATACACAGCACGGTCTATGATTCCTTTGAGTTTGAATAGACCAAAGCATCAAATATATTTCCTTTGAGTTTGAGGATAAGGAAGATCCTTTCAGGAGCAGTCATGGACACACCAGGGTTAGCCACAAATGTTTAATGACATGAAAGGTCTTCCTGCTCCTTGAGGTCCACCGTCCTTAGTTTTCCTCCAACCTTTTCAGAAAACACATTTGATGTCAGTATCTGTGTCTCTTTCCGAAGAGTGCGCCCTCTGGAGGTCGCATTTGTCAGCTGCATGCATTGTAGTGCCAAGCTAACTTACCTAAATGTGTTCTGGTCAAGTGAACTTTATGGTCAGTCGTAAGTGAGACATTTAATTCTCATAAGTTTGAAATCTAATCTATGATTTTGTCAGGATCTGAGTCAGATCAGCTCTCATCTGATGGGGTAAGATAAAATGATCTGCTGAAAGGCTGAAAAAGATCCAAGATTGTATGTGTCAAGTTTATTTGTTTTTGTCTTTTTAAGTGATGTTTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU548174 lncRNA upstream 1806 1071577 ~ 1074461 (+) False G477714
TU548175 lncRNA upstream 1806 1071577 ~ 1074461 (+) True G477714
TU548171 lncRNA upstream 102065 973917 ~ 974202 (+) True G477711
TU548163 lncRNA upstream 109131 966724 ~ 967136 (+) True G477706
TU548158 lncRNA upstream 115331 960694 ~ 960936 (+) True G477703
TU547941 lncRNA downstream 4389 1082415 ~ 1083264 (+) True G477496
TU547962 lncRNA downstream 47977 1126003 ~ 1129011 (+) True G477517
CI01000335_01055918_01061590.mRNA mRNA upstream 14551 1055918 ~ 1061716 (+) True CI01000335_01055918_01061590
CI01000335_01029328_01043603.mRNA mRNA upstream 32664 1029328 ~ 1043603 (+) True CI01000335_01029328_01043603
CI01000335_00988268_00990978.mRNA mRNA upstream 84930 988268 ~ 991337 (+) True CI01000335_00988268_00990978
CI01000335_00930276_00934328.mRNA mRNA upstream 139887 930276 ~ 936380 (+) True CI01000335_00930276_00934328
CI01000335_00884515_00888701.mRNA mRNA upstream 187436 884338 ~ 888831 (+) True CI01000335_00884515_00888701
CI01000335_01109924_01114152.mRNA mRNA downstream 31898 1109924 ~ 1114152 (+) True CI01000335_01109924_01114152
TU547947 other upstream 521634 549522 ~ 554633 (+) True G477502

Expression Profile