RNA id: TU547962


Basic Information

Item Value
RNA id TU547962
length 2977
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id G477517
representative True

Chromosome Information

Item Value
chromosome id CI01000335
NCBI id null
chromosome length 1176510
location 1126003 ~ 1129011 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAACTAAAACTTTTACACTAGGGATGTAGCTAACAGATTAACCTTTTAATGACAATAATAAAAAAATAAATAGATAAATATTACACCAATATTGTACAACTAAAACTTTTATACTAGGGATGTAGTTACCAGTTTAACCCTTTACTGACAATTATCAACTAATATCATCAGTCTAAAAAAATAAATAAATTATTACATCAATATTGTACAACTAAAACTTTTACACTAGGGATGTAGTCAACAAATGAATCATTTACTAATAAGTTCAAACCAATTATGTCCCTATTGTACAACTAACAACAGAAAAATACTTTGGGTTGTGCTTCATTTTGTTCCCCTTATTACAATGTAATTATAGATTTAAGTACTGCATAATATTAATTAATTAACATGCTTACTACAGGGTTAGATTTTTGGTTTAGGGACCGTTGCATGTAATTATAAATAATTTACTGTTAAGTAACAACGTAACAAGTAACAACGTGTAACAAGAACACTAAAATAAAGTGTTACCGAACTTTGAAAAATATCTTATGTACAGTCACATGATATGAAGACTGCCATCAGTGACCAAAACCATCTCAACAACCTTATTATGAACATGTTCAGTTATATGATTATCACTTCTTGTACTTTTAAATGACCATTTCTGACAGCTGATGAGGGTGAAATAATGAAAGGTCAGCACTAGACTGTACCTCTCCCAACTTGTCCAGTTTGATGTAGGTCTCCAGTTTCCCAAAGCCGATTTCTGACTATAAAAAGAGAAAAAGACAGGGACTGCTTCATTAATGAGATCTGGTTAATGCTGAACAGCCTGCGTGTGTTCAACAGACCTTATCAGTGAGAAACACGTGTCTGGAGTGTTGCTCGCCGTCTCTGATATCTGCAGCCAAAATCACTTCCCAGACAAAGCCATTAATCACACACACACTGTATCCAGACTCCCACGGGCACCAGGGGGCACCAGAACAACAACATAAACCCCCTCTACTTTACACACATGGAGGGTTGGAGGTGGGGACGACATAGACGGATGACAGCTAAGAACAATGGATGCCAAGTAAACCCAGACGCAAAAGCAGGGAGCTTTTCACATGCAAAACCCCCTATGTATGCGGCCAACAGACAAAGAACATGGTATGTGTCTTTGTGCTCAACTGAGAGTACGACACAATGTTTGTAGCGACACACTGGGGTTCTCGTCCACGGGCCGGGTTTATCTGCAGCAGGCCATGTTGTTTTGAAAAGCTTGCTGTGGACTGTGTACTCATTAACTCAAGCTTAAAATTCTCCAGACGTAATCTTTTACCCTTAAAAAAAGTGGCTCAAACAAACAAAAATCCTTTACTCAGCCTCATGTCATTCCAAATTCGTTTGACTTTCTTTTTATCTATGGAACATAAAAGTTCTTCACAATTGTATTTTGCATACATTAAAGTTTGTACAATGAGATTTCAAACAACTAAAAAGCAGTTTAAAAGTAGCCCATACAGTTTGTGCATTATATTTCAGTAAGTCTTATATAGGCTTATGATAGTTTTCTCTGTGCTTCTGAAATCTCATTTGATCAGATCACATTTTGTAACCAATCGTGATGAACAAAAGTTAGAACGATAGAACAATAGATAGAAATGACAGACAGAACGATCGATAGATAGAACGATCGATAGATAGAGCTGCTCATCTCACAGTGATGATTGGATGGATTGTTGGGAAAAGTACGATAGATAGAATGATTGAATGAAGGAACAATCAATCAATCAATCAATCAATCAATATAGATCGAAAAAGCTGCTCGGATGGATGGATGGGTTGGTCAGTGGATGGATGGATGAATGGGAAAATAGCTAAAACAACAGAACGATAGATGAAATGATTGAACGATAGAGCTGCTCAGCTCACAATGATGGATGGATGGATGGATGGATGGATGGGAAAAGAGCTTCTAGAATGATAGACCGAACGAACAAACGATCAATCGATAGAGCTACTCGGCTCAGAGTGACGGATGGATGGATGATGGATGGGAAAAGAGCTGCTAAAATAATAGAACGAACGAAGGATCGATCAATCAATAGAGATAGAATTTTGGGGTGAAATATGACCTGCATATGTCAATGACATTCAACCAGAAAAATCCTTGTATACAAAAGCATTACAAGTTTAACAGATCATATATTAGAAACCCACAATAGGGCTAAAAATAGTGCTTTCTGGAGCTTAACAGCTCCTAGTTATTGTATGATTCCACTGCACTGATGATTAAAAGCAACTTATACATTGTGCAAAGCATCTCCTGTTGTGTTTCACAGAAGAATGAATGTCAAATAGGTTTGATACAACATGAGGACGAGTAAATGCTGACACAATCATTTCCAGGTGAACCGCCAATTTAAACAGATCTAAAACACACCATTAGCGTCACTCAGAAAGCACTTGTTTTTAGAAGTATCTTTCTCAATGTTTAAACCATTTTCTCTCAGCGTGACAATGGCTTGCTGTTTGACAGCCATGTAATCGTTTTAACCCGGCCAGACTGAATAATCTACATAAATCCCACATTGTGTTTGAAACAATAATGTTTATTAATCTTGAACATCATGATCTCACAGCCATTCATGTCAATGGGGAAACCTAACATGGAGTTGTGTTGCTATGCAGCGTTGCTTCTGATATGCTCAACAAAGAGATGCACGGCATTTTGCCAAACCTAGGATACAGTGATTCATTTCTGAGATAAAATGAGGAGATTTCCCATGTTTAAGTGGTTTAGAGGAAGCACAAAAACATACTTGAGACTACTAGGGAGCAAATATGACATTATAAAGATGACCTCAGGGGTTATGCAAACAAACTTACCAGCGAGGCTCTGCGCGATCGTCGACTGAGGGGTTGGTCAAACGGCGGGCTGCTCAACTGTAGCTTTTCCAGGTAACCGTCAGGAATCCGGATATCAGCAGGCAAAGACAAGCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU547941 lncRNA upstream 42739 1082415 ~ 1083264 (+) True G477496
TU547949 lncRNA upstream 47977 1076267 ~ 1078026 (+) True G477504
TU548174 lncRNA upstream 51542 1071577 ~ 1074461 (+) False G477714
TU548175 lncRNA upstream 51542 1071577 ~ 1074461 (+) True G477714
TU548171 lncRNA upstream 151801 973917 ~ 974202 (+) True G477711
CI01000335_01109924_01114152.mRNA mRNA upstream 11851 1109924 ~ 1114152 (+) True CI01000335_01109924_01114152
CI01000335_01055918_01061590.mRNA mRNA upstream 64287 1055918 ~ 1061716 (+) True CI01000335_01055918_01061590
CI01000335_01029328_01043603.mRNA mRNA upstream 82400 1029328 ~ 1043603 (+) True CI01000335_01029328_01043603
CI01000335_00988268_00990978.mRNA mRNA upstream 134666 988268 ~ 991337 (+) True CI01000335_00988268_00990978
CI01000335_00930276_00934328.mRNA mRNA upstream 189623 930276 ~ 936380 (+) True CI01000335_00930276_00934328
TU547947 other upstream 571370 549522 ~ 554633 (+) True G477502

Expression Profile