RNA id: TCONS_00001606


Basic Information

Item Value
RNA id TCONS_00001606
length 609
RNA type mRNA
GC content 0.50
exon number 4
gene id XLOC_001011
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 9100447 ~ 9115034 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCATATCTCGCTGTGCGCCGGTTTAAAAGCATGCTAATGCAAGCCAAAGCGGAGCAAACACGCAGCAGTTATCGCAGATTTAATCACTTTGATGAGCTTTCGGCTCGTTTTTGGGGAAGGTCCTGGCCTGGCTCTGAGGACTCTCTGGATAACCCTGGCTTCACCCGCTCAGATGAACTGCTTCACCTGAGGGCTCTCGACCGCACCTGCTGTTACCATGACGACACTCTATCAGTGGTGTCCACATACCATGGTAGCGGAGCACACCTCAACACTGTATATCCTCATGGTTCTCAGTATGGCTGGGATCTCAGCAACTGCAGCCTGGCAGATGGTGTGGTGGATTCTGGGAAGGCTAGTGACTTATCAGTGTGTAGCTGGCCGATTGAGCCGATTCAGTGGACACCATTCCCTTTACTGCAGCAGCTGTCCAGAAATACCACCACGGTCAAAGCATCTCGTCCTCGCTCTTACTGTGAAGGCATGGAGCTGGTGGACTTGGAGAAGAGCTGGACTGCATAACGGGCACTCCAAATGTGAGAATATTACATCTTCTTAAGAAACATGATTGTTGTGcccaacaataataaaatgtcaatttaCTGAAA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-051214-4 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in blood; blood vasculature; brain; eye; and intermediate cell mass of mesoderm.

Ensembl:

ensembl_id ENSDART00000146642

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003338 lncRNA downstream 17675 9081842 ~ 9082772 (-) True XLOC_001010
TCONS_00003337 lncRNA downstream 119776 8978905 ~ 8980671 (-) False XLOC_001009
TCONS_00001604 lncRNA downstream 122484 8974500 ~ 8977963 (-) True XLOC_001008
TCONS_00003336 lncRNA downstream 122487 8974500 ~ 8977960 (-) False XLOC_001008
TCONS_00001597 lncRNA downstream 447799 8650109 ~ 8652648 (-) False XLOC_001004
TCONS_00003339 lncRNA upstream 34007 9138638 ~ 9139160 (-) True XLOC_001015
TCONS_00001614 lncRNA upstream 52679 9157310 ~ 9162637 (-) True XLOC_001016
TCONS_00001626 lncRNA upstream 203640 9308271 ~ 9314795 (-) False XLOC_001023
TCONS_00001627 lncRNA upstream 209877 9314508 ~ 9321931 (-) True XLOC_001023
TCONS_00003340 lncRNA upstream 316193 9420824 ~ 9422275 (-) True XLOC_001024
TCONS_00001605 mRNA downstream 119782 8978908 ~ 8980665 (-) True XLOC_001009
TCONS_00001602 mRNA downstream 134401 8962624 ~ 8966046 (-) False XLOC_001007
TCONS_00001603 mRNA downstream 136963 8962853 ~ 8963484 (-) True XLOC_001007
TCONS_00001600 mRNA downstream 171606 8763429 ~ 8928841 (-) False XLOC_001006
TCONS_00001601 mRNA downstream 182545 8765624 ~ 8917902 (-) True XLOC_001006
TCONS_00001608 mRNA upstream 408 9105039 ~ 9109699 (-) False XLOC_001011
TCONS_00001609 mRNA upstream 8999 9113630 ~ 9115034 (-) True XLOC_001011
TCONS_00001611 mRNA upstream 13469 9118100 ~ 9123465 (-) True XLOC_001012
TCONS_00001612 mRNA upstream 20392 9125023 ~ 9130136 (-) True XLOC_001013
TCONS_00001613 mRNA upstream 27704 9132335 ~ 9134045 (-) True XLOC_001014
TCONS_00001595 other downstream 447792 8650109 ~ 8652655 (-) False XLOC_001004
TCONS_00001587 other downstream 547149 8552750 ~ 8553298 (-) True XLOC_000999
TCONS_00001570 other downstream 1124678 7970406 ~ 7975769 (-) True XLOC_000989
TCONS_00001564 other downstream 1180241 7920119 ~ 7920206 (-) True XLOC_000985
TCONS_00001563 other downstream 1180880 7919480 ~ 7919567 (-) True XLOC_000984
TCONS_00001610 other upstream 13469 9118100 ~ 9118671 (-) False XLOC_001012
TCONS_00001617 other upstream 93228 9197859 ~ 9197966 (-) True XLOC_001018
TCONS_00001629 other upstream 355379 9460010 ~ 9486080 (-) False XLOC_001025
TCONS_00001646 other upstream 636171 9740802 ~ 9816875 (-) True XLOC_001029
TCONS_00001656 other upstream 958870 10063501 ~ 10064568 (-) False XLOC_001036

Expression Profile

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